Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, plastid, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- endoplasmic reticulum 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2A01G111200.1 | Wheat | cytosol, endoplasmic reticulum, plasma membrane | 95.49 | 95.49 |
| HORVU2Hr1G019280.1 | Barley | cytosol | 78.78 | 78.36 |
| Os07t0673700-01 | Rice | cytosol | 77.98 | 77.57 |
| EER97716 | Sorghum | plastid | 77.45 | 77.25 |
| Zm00001d007152_P001 | Maize | plastid | 74.54 | 74.73 |
| TraesCS2D01G111900.1 | Wheat | nucleus | 73.21 | 60.66 |
| GSMUA_Achr2P14860_001 | Banana | cytosol, endoplasmic reticulum, plastid | 52.25 | 52.81 |
| KRG89620 | Soybean | cytosol | 16.71 | 47.01 |
| VIT_07s0031g01580.t01 | Wine grape | plastid | 39.52 | 41.27 |
| Solyc04g051870.1.1 | Tomato | extracellular | 38.99 | 41.18 |
| PGSC0003DMT400042717 | Potato | cytosol | 38.99 | 41.18 |
| KRH53797 | Soybean | cytosol | 39.26 | 40.88 |
| KRH64149 | Soybean | cytosol | 38.73 | 40.67 |
| CDY46225 | Canola | cytosol | 38.99 | 39.84 |
| Bra030269.1-P | Field mustard | cytosol | 38.46 | 39.3 |
| CDY15853 | Canola | cytosol | 38.2 | 39.02 |
| AT2G21950.1 | Thale cress | cytosol | 37.14 | 37.63 |
| CDY15875 | Canola | cytosol | 21.75 | 27.06 |
| Bra030282.1-P | Field mustard | cytosol | 22.28 | 26.01 |
| CDY13796 | Canola | cytosol | 26.26 | 25.92 |
| Bra030283.1-P | Field mustard | cytosol | 19.63 | 25.87 |
| CDY59764 | Canola | cytosol | 25.99 | 25.26 |
| Bra031212.1-P | Field mustard | cytosol | 25.99 | 25.19 |
| CDY13795 | Canola | cytosol | 25.99 | 25.0 |
| CDX99573 | Canola | cytosol | 20.95 | 24.53 |
| CDX99574 | Canola | cytosol | 22.02 | 24.41 |
| AT2G29770.1 | Thale cress | cytosol | 24.4 | 23.77 |
| AT2G29810.1 | Thale cress | cytosol | 24.14 | 23.76 |
| CDY56757 | Canola | plastid | 23.61 | 23.67 |
| AT2G29860.1 | Thale cress | cytosol | 14.85 | 23.33 |
| CDY15078 | Canola | extracellular | 17.51 | 23.32 |
| Bra033610.1-P | Field mustard | plastid | 23.08 | 23.14 |
| Bra025310.1-P | Field mustard | cytosol, plastid | 22.81 | 23.06 |
| CDY69098 | Canola | cytosol, plastid | 22.81 | 23.06 |
| CDY15873 | Canola | cytosol | 9.81 | 22.7 |
| AT4G14905.2 | Thale cress | plastid | 22.28 | 22.58 |
| AT2G29830.1 | Thale cress | cytosol | 22.81 | 22.45 |
| AT3G27910.1 | Thale cress | extracellular, golgi | 17.51 | 22.45 |
| CDY44445 | Canola | cytosol | 22.02 | 22.19 |
| AT2G29780.1 | Thale cress | cytosol | 23.34 | 22.11 |
| AT1G19460.1 | Thale cress | cytosol | 23.87 | 21.63 |
| Bra033606.1-P | Field mustard | cytosol | 22.81 | 21.39 |
| AT4G39240.1 | Thale cress | cytosol, nucleus, peroxisome | 21.22 | 21.33 |
| AT2G29820.1 | Thale cress | cytosol | 21.75 | 21.13 |
| AT1G19470.1 | Thale cress | cytosol | 23.08 | 21.12 |
| AT2G21680.1 | Thale cress | cytosol | 23.08 | 20.28 |
| AT2G29600.1 | Thale cress | nucleus | 22.02 | 20.0 |
| AT2G29800.1 | Thale cress | cytosol | 21.75 | 19.81 |
| CDX72708 | Canola | plastid | 25.2 | 12.6 |
Protein Annotations
| EnsemblPlants:TraesCS2B01G130200.1 | EnsemblPlantsGene:TraesCS2B01G130200 | Gene3D:2.120.10.80 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR015915 | InterPro:Kelch-typ_b-propeller | InterPro:Kelch_1 | PANTHER:PTHR24414 | PANTHER:PTHR24414:SF23 | PFAM:PF01344 |
| SEG:seg | SMART:SM00612 | SUPFAM:SSF117281 | MapMan:35.1 | : | : |
Description
No Description!
Coordinates
chr2B:-:97436350..97437483
Molecular Weight (calculated)
40051.6 Da
IEP (calculated)
8.148
GRAVY (calculated)
0.122
Length
377 amino acids
Sequence
(BLAST)
(BLAST)
001: MSAASASSPQ PPEAIRGTLI PVLPDDLAVQ CIALLPRAAH PTLALVSRAL HGLLCLHPEP LLAARRRLGR SDPHIVISVR PPYSASPRFF LLLPHPGWPP
101: LPLPSPPIPV SSSSAVAVNG HRLYLVGGSV AGIPASSVQI LDTRTRSWSI GPRLSSPREF AAAAVLPGLL FVAGGCVPSS PFWAEALDLA SPHARWSPVP
201: SPDHLREKWM HGCVSLAGKV LAVADRGGLV YDPAAPPGEA WAPVSPVLDM GWKGRAAVVG GILYSYDYMG QVKGYDPDTD TWNTVEGLEK ELPRFLCGAT
301: LANVGGLLYL IWEGKWKGKS SKGEGKVKDM VVIEWATIEV TRVEEGRLSG KVISRDTAVF TDMPGGSAIT HCISLDL
101: LPLPSPPIPV SSSSAVAVNG HRLYLVGGSV AGIPASSVQI LDTRTRSWSI GPRLSSPREF AAAAVLPGLL FVAGGCVPSS PFWAEALDLA SPHARWSPVP
201: SPDHLREKWM HGCVSLAGKV LAVADRGGLV YDPAAPPGEA WAPVSPVLDM GWKGRAAVVG GILYSYDYMG QVKGYDPDTD TWNTVEGLEK ELPRFLCGAT
301: LANVGGLLYL IWEGKWKGKS SKGEGKVKDM VVIEWATIEV TRVEEGRLSG KVISRDTAVF TDMPGGSAIT HCISLDL
001: MAATTSSGDE PPETKSPAQL IPLLSEDVAL SCLARVPRCH YPILSLVSKT FRSLPTSPLL YATRALVGAT ENILYVAIRI PPESGACWFT LLHRTLSNST
101: NSKMLVPIPS CPSPSLVGSA YVVVDSEIYV IGGSIRDVPS SSVWVLDCRF HTWRRVSNMR VGREFAAAGV IDGKIYVIGG CVVDNWARSI NWAEMFDIKT
201: QTWEPVASPG MEVREKWMHA SAVMEGKVYA MADRNGVVYE PKEKKWEMPE KRLDLGWRGR ACVIENILYC YDYLGKIRGY DPKERIWREL KGVESLPKFL
301: CGATMANRGG KLTVLWEGKA GSGGSRRMEI WCAEIDVGRR GEREIWGKIE WSGTVLTVPN ESAIVNCLAA TV
101: NSKMLVPIPS CPSPSLVGSA YVVVDSEIYV IGGSIRDVPS SSVWVLDCRF HTWRRVSNMR VGREFAAAGV IDGKIYVIGG CVVDNWARSI NWAEMFDIKT
201: QTWEPVASPG MEVREKWMHA SAVMEGKVYA MADRNGVVYE PKEKKWEMPE KRLDLGWRGR ACVIENILYC YDYLGKIRGY DPKERIWREL KGVESLPKFL
301: CGATMANRGG KLTVLWEGKA GSGGSRRMEI WCAEIDVGRR GEREIWGKIE WSGTVLTVPN ESAIVNCLAA TV
Arabidopsis Description
SKIP6F-box/kelch-repeat protein SKIP6 [Source:UniProtKB/Swiss-Prot;Acc:Q9SJ04]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.