Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- mitochondrion 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY56757 | Canola | plastid | 60.27 | 60.11 |
| Bra033610.1-P | Field mustard | plastid | 59.47 | 59.31 |
| AT4G14905.2 | Thale cress | plastid | 50.13 | 50.54 |
| Bra033606.1-P | Field mustard | cytosol | 52.8 | 49.25 |
| AT3G27910.1 | Thale cress | extracellular, golgi | 33.33 | 42.52 |
| AT2G21950.1 | Thale cress | cytosol | 36.8 | 37.1 |
| KRG89620 | Soybean | cytosol | 12.53 | 35.07 |
| AT2G29830.1 | Thale cress | cytosol | 33.87 | 33.16 |
| AT2G29810.1 | Thale cress | cytosol | 33.6 | 32.9 |
| AT1G19460.1 | Thale cress | cytosol | 35.2 | 31.73 |
| KRH64149 | Soybean | cytosol | 29.6 | 30.92 |
| CDX72708 | Canola | plastid | 61.87 | 30.77 |
| VIT_07s0031g01580.t01 | Wine grape | plastid | 29.33 | 30.47 |
| AT2G29860.1 | Thale cress | cytosol | 19.47 | 30.42 |
| AT2G29820.1 | Thale cress | cytosol | 31.47 | 30.41 |
| AT1G19470.1 | Thale cress | cytosol | 33.33 | 30.34 |
| PGSC0003DMT400042717 | Potato | cytosol | 28.8 | 30.25 |
| KRH53797 | Soybean | cytosol | 29.07 | 30.11 |
| Solyc04g051870.1.1 | Tomato | extracellular | 28.53 | 29.97 |
| AT2G29600.1 | Thale cress | nucleus | 33.07 | 29.88 |
| AT2G29770.1 | Thale cress | cytosol | 30.67 | 29.72 |
| AT2G29780.1 | Thale cress | cytosol | 30.4 | 28.64 |
| AT2G29800.1 | Thale cress | cytosol | 30.93 | 28.02 |
| AT2G21680.1 | Thale cress | cytosol | 32.0 | 27.97 |
| GSMUA_Achr2P14860_001 | Banana | cytosol, endoplasmic reticulum, plastid | 23.2 | 23.32 |
| EER97716 | Sorghum | plastid | 21.87 | 21.69 |
| Zm00001d007152_P001 | Maize | plastid | 21.6 | 21.54 |
| TraesCS2A01G111200.1 | Wheat | cytosol, endoplasmic reticulum, plasma membrane | 21.33 | 21.22 |
| TraesCS2B01G130200.1 | Wheat | cytosol, endoplasmic reticulum, plastid | 21.33 | 21.22 |
| Os07t0673700-01 | Rice | cytosol | 20.8 | 20.58 |
| HORVU2Hr1G019280.1 | Barley | cytosol | 17.33 | 17.15 |
| TraesCS2D01G111900.1 | Wheat | nucleus | 18.13 | 14.95 |
Protein Annotations
| Gene3D:2.120.10.80 | MapMan:35.1 | EntrezGene:830080 | ProteinID:AEE87042.1 | EMBL:AF370467 | ArrayExpress:AT4G39240 |
| EnsemblPlantsGene:AT4G39240 | RefSeq:AT4G39240 | TAIR:AT4G39240 | RefSeq:AT4G39240-TAIR-G | EnsemblPlants:AT4G39240.1 | TAIR:AT4G39240.1 |
| EMBL:AY128921 | Unigene:At.3308 | ProteinID:CAB43639.1 | ProteinID:CAB80587.1 | InterPro:F-box-like_dom_sf | InterPro:F-box_dom |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | InterPro:IPR001810 | InterPro:IPR015915 | InterPro:Kelch-typ_b-propeller |
| InterPro:Kelch_1 | RefSeq:NP_195635.1 | PFAM:PF00646 | PFAM:PF01344 | PO:PO:0000013 | PO:PO:0000037 |
| PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001054 |
| PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 |
| PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 |
| PO:PO:0025195 | PO:PO:0025281 | PFscan:PS50181 | PANTHER:PTHR24414 | PANTHER:PTHR24414:SF23 | UniProt:Q9T031 |
| SMART:SM00256 | SMART:SM00612 | SUPFAM:SSF117281 | SUPFAM:SSF81383 | UniParc:UPI00000AB2DC | SEG:seg |
Description
F-box/kelch-repeat protein At4g39240 [Source:UniProtKB/Swiss-Prot;Acc:Q9T031]
Coordinates
chr4:-:18269150..18270800
Molecular Weight (calculated)
42051.8 Da
IEP (calculated)
6.940
GRAVY (calculated)
-0.048
Length
375 amino acids
Sequence
(BLAST)
(BLAST)
001: MPFSAASSSS VSSIAEEPPP KKQHDPSPSC SSYLLLLPDE IILNCLARLP KCYYPVISLV SKTFRRLIAS PEIYVERSLL RRTERVLYVV LRSHATETPR
101: WYTLNFKPFG NDSNNHRLVP IPSFPSIPCW GMSIVAIDSE IYVLGGCIDN ELVSTGFVVE CPSHTCRLLP SMKQARGCAA VGFFDGKLYV IGGCNPLSVN
201: WVEAFDLKTQ TWESGLGVNN VEMHDLTIRS FAIDDKIYIM DRKNSFVYDP KEGTLETDEL LDTQWSVGSC VIDGKIYTFG SKNRIWVFDP IAMVWDRLKG
301: LDDLPDKRDG SRMSNLGGNL AIMFNLEKGS TKICCTEIRL ERREGGKIWG TVLWSNIVIT LKEPSTIVRC LTVTV
101: WYTLNFKPFG NDSNNHRLVP IPSFPSIPCW GMSIVAIDSE IYVLGGCIDN ELVSTGFVVE CPSHTCRLLP SMKQARGCAA VGFFDGKLYV IGGCNPLSVN
201: WVEAFDLKTQ TWESGLGVNN VEMHDLTIRS FAIDDKIYIM DRKNSFVYDP KEGTLETDEL LDTQWSVGSC VIDGKIYTFG SKNRIWVFDP IAMVWDRLKG
301: LDDLPDKRDG SRMSNLGGNL AIMFNLEKGS TKICCTEIRL ERREGGKIWG TVLWSNIVIT LKEPSTIVRC LTVTV
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.