Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT2G29800.1 | Thale cress | cytosol | 62.65 | 62.8 |
| AT2G29810.1 | Thale cress | cytosol | 49.88 | 54.05 |
| AT2G29860.1 | Thale cress | cytosol | 28.92 | 50.0 |
| AT2G29780.1 | Thale cress | cytosol | 47.23 | 49.25 |
| AT2G29770.1 | Thale cress | cytosol | 42.65 | 45.74 |
| AT2G29830.1 | Thale cress | cytosol | 40.48 | 43.86 |
| CDY15873 | Canola | cytosol | 16.63 | 42.33 |
| AT2G29820.1 | Thale cress | cytosol | 38.8 | 41.49 |
| CDX99573 | Canola | cytosol | 31.81 | 40.99 |
| Bra030282.1-P | Field mustard | cytosol | 31.33 | 40.25 |
| AT1G19470.1 | Thale cress | cytosol | 38.55 | 38.84 |
| CDX99574 | Canola | cytosol | 31.57 | 38.53 |
| AT1G19460.1 | Thale cress | cytosol | 38.31 | 38.22 |
| CDY15875 | Canola | cytosol | 26.99 | 36.96 |
| Bra030283.1-P | Field mustard | cytosol | 24.34 | 35.31 |
| AT3G27910.1 | Thale cress | extracellular, golgi | 24.82 | 35.03 |
| AT2G21680.1 | Thale cress | cytosol | 34.7 | 33.57 |
| AT4G39240.1 | Thale cress | cytosol, nucleus, peroxisome | 29.88 | 33.07 |
| AT2G21950.1 | Thale cress | cytosol | 29.64 | 33.06 |
| AT4G14905.2 | Thale cress | plastid | 28.67 | 31.99 |
| KRG89620 | Soybean | cytosol | 9.88 | 30.6 |
| KRH64149 | Soybean | cytosol | 25.54 | 29.53 |
| PGSC0003DMT400042717 | Potato | cytosol | 24.1 | 28.01 |
| KRH53797 | Soybean | cytosol | 24.34 | 27.9 |
| Solyc04g051870.1.1 | Tomato | extracellular | 23.86 | 27.73 |
| VIT_07s0031g01580.t01 | Wine grape | plastid | 24.1 | 27.7 |
| GSMUA_Achr2P14860_001 | Banana | cytosol, endoplasmic reticulum, plastid | 21.45 | 23.86 |
| TraesCS2B01G130200.1 | Wheat | cytosol, endoplasmic reticulum, plastid | 20.0 | 22.02 |
| TraesCS2A01G111200.1 | Wheat | cytosol, endoplasmic reticulum, plasma membrane | 19.52 | 21.49 |
| EER97716 | Sorghum | plastid | 19.04 | 20.9 |
| Zm00001d007152_P001 | Maize | plastid | 18.55 | 20.48 |
| Os07t0673700-01 | Rice | cytosol | 18.55 | 20.32 |
| HORVU2Hr1G019280.1 | Barley | cytosol | 15.9 | 17.41 |
| TraesCS2D01G111900.1 | Wheat | nucleus | 16.14 | 14.73 |
Protein Annotations
| Gene3D:2.120.10.80 | MapMan:35.1 | EntrezGene:817509 | ProteinID:AAC95179.1 | ProteinID:AEC08277.1 | ArrayExpress:AT2G29600 |
| EnsemblPlantsGene:AT2G29600 | RefSeq:AT2G29600 | TAIR:AT2G29600 | RefSeq:AT2G29600-TAIR-G | EnsemblPlants:AT2G29600.1 | TAIR:AT2G29600.1 |
| EMBL:AY247814 | Unigene:At.48529 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0016020 | GO:GO:0016021 | InterPro:IPR015915 | InterPro:Kelch-typ_b-propeller | InterPro:Kelch_1 | RefSeq:NP_180520.1 |
| PFAM:PF01344 | PO:PO:0001078 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0009010 | PO:PO:0009030 |
| PO:PO:0009046 | PO:PO:0009047 | PANTHER:PTHR24414 | PANTHER:PTHR24414:SF23 | UniProt:Q9ZW38 | SMART:SM00612 |
| SUPFAM:SSF117281 | UniParc:UPI000009C54A | SEG:seg | : | : | : |
Description
F-box/kelch-repeat protein At2g29600 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZW38]
Coordinates
chr2:+:12655151..12657296
Molecular Weight (calculated)
47494.5 Da
IEP (calculated)
5.481
GRAVY (calculated)
-0.340
Length
415 amino acids
Sequence
(BLAST)
(BLAST)
001: MASISETSDD GSNGGDPNQK PEEPHKNPQE GKEEENQNEK PKEDDHQEEE VENVPQIPPQ MPLELIVSTI ATLRRCHYPT LSLLSDSFRQ VISSVDLFQT
101: RSLIGSTEPV LYTLITFTSP NFEEPRWFIL QRRNNTSLQL SLVTSLPPMF PGCTTVTIGH KIYVMGGLRS LNRRAKTVFV IDCRFHTWRY LQEMQVARSY
201: AASAVIDGMI YVVGGSTKRS DDWVEVFNVE TNTWENVPSV LSPYGRSKAP FNVHFVLDNK IYILDGNNRV AYDLRGRRWE DWGPAGNQLG YFWQVLYCVV
301: DNLLYAVVPD HLHVTPIVVY DPREMGWRPV MGVDYLPNLV YSESRMTNFG GKLMILGCYQ SQARFDYYGE VNVWCVEVAL ERREDGEIWG KVQSLSLVNK
401: FRKSPVFVLS RTVTV
101: RSLIGSTEPV LYTLITFTSP NFEEPRWFIL QRRNNTSLQL SLVTSLPPMF PGCTTVTIGH KIYVMGGLRS LNRRAKTVFV IDCRFHTWRY LQEMQVARSY
201: AASAVIDGMI YVVGGSTKRS DDWVEVFNVE TNTWENVPSV LSPYGRSKAP FNVHFVLDNK IYILDGNNRV AYDLRGRRWE DWGPAGNQLG YFWQVLYCVV
301: DNLLYAVVPD HLHVTPIVVY DPREMGWRPV MGVDYLPNLV YSESRMTNFG GKLMILGCYQ SQARFDYYGE VNVWCVEVAL ERREDGEIWG KVQSLSLVNK
401: FRKSPVFVLS RTVTV
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.