Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT2G29860.1 | Thale cress | cytosol | 39.95 | 64.58 |
| AT2G29830.1 | Thale cress | cytosol | 60.57 | 61.36 |
| AT2G29810.1 | Thale cress | cytosol | 46.91 | 47.52 |
| AT2G29780.1 | Thale cress | cytosol | 44.85 | 43.72 |
| AT2G29770.1 | Thale cress | cytosol | 43.04 | 43.15 |
| CDX99573 | Canola | cytosol | 34.28 | 41.3 |
| AT2G29800.1 | Thale cress | cytosol | 43.56 | 40.82 |
| Bra030282.1-P | Field mustard | cytosol | 32.99 | 39.63 |
| AT2G29600.1 | Thale cress | nucleus | 41.49 | 38.8 |
| CDY15875 | Canola | cytosol | 30.15 | 38.61 |
| AT1G19470.1 | Thale cress | cytosol | 40.72 | 38.35 |
| CDX99574 | Canola | cytosol | 32.47 | 37.06 |
| AT1G19460.1 | Thale cress | cytosol | 39.43 | 36.78 |
| CDY15873 | Canola | cytosol | 15.21 | 36.2 |
| Bra030283.1-P | Field mustard | cytosol | 26.55 | 36.01 |
| AT2G21680.1 | Thale cress | cytosol | 35.57 | 32.17 |
| AT3G27910.1 | Thale cress | extracellular, golgi | 24.23 | 31.97 |
| AT4G39240.1 | Thale cress | cytosol, nucleus, peroxisome | 30.41 | 31.47 |
| AT4G14905.2 | Thale cress | plastid | 29.12 | 30.38 |
| AT2G21950.1 | Thale cress | cytosol | 28.87 | 30.11 |
| KRH64149 | Soybean | cytosol | 27.06 | 29.25 |
| KRH53797 | Soybean | cytosol | 26.8 | 28.73 |
| KRG89620 | Soybean | cytosol | 9.79 | 28.36 |
| VIT_07s0031g01580.t01 | Wine grape | plastid | 25.0 | 26.87 |
| PGSC0003DMT400042717 | Potato | cytosol | 24.48 | 26.61 |
| Solyc04g051870.1.1 | Tomato | extracellular | 24.48 | 26.61 |
| GSMUA_Achr2P14860_001 | Banana | cytosol, endoplasmic reticulum, plastid | 25.0 | 26.01 |
| TraesCS2A01G111200.1 | Wheat | cytosol, endoplasmic reticulum, plasma membrane | 21.39 | 22.02 |
| TraesCS2B01G130200.1 | Wheat | cytosol, endoplasmic reticulum, plastid | 21.13 | 21.75 |
| EER97716 | Sorghum | plastid | 20.88 | 21.43 |
| Zm00001d007152_P001 | Maize | plastid | 20.62 | 21.28 |
| Os07t0673700-01 | Rice | cytosol | 20.36 | 20.84 |
| HORVU2Hr1G019280.1 | Barley | cytosol | 17.78 | 18.21 |
| TraesCS2D01G111900.1 | Wheat | nucleus | 18.3 | 15.6 |
Protein Annotations
| Gene3D:2.120.10.80 | MapMan:35.1 | EntrezGene:817532 | ProteinID:AAC35219.1 | ProteinID:AEC08308.1 | ArrayExpress:AT2G29820 |
| EnsemblPlantsGene:AT2G29820 | RefSeq:AT2G29820 | TAIR:AT2G29820 | RefSeq:AT2G29820-TAIR-G | EnsemblPlants:AT2G29820.1 | TAIR:AT2G29820.1 |
| Unigene:At.66275 | InterPro:F-box-like_dom_sf | InterPro:F-box_dom | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR001810 | InterPro:IPR015915 | InterPro:Kelch-typ_b-propeller | InterPro:Kelch_1 | RefSeq:NP_180543.1 | UniProt:O82374 |
| PFAM:PF00646 | PFAM:PF01344 | PO:PO:0000037 | PO:PO:0007611 | PO:PO:0009046 | PFscan:PS50181 |
| PANTHER:PTHR24414 | PANTHER:PTHR24414:SF23 | SMART:SM00612 | SUPFAM:SSF117281 | SUPFAM:SSF81383 | UniParc:UPI000009D459 |
| SEG:seg | : | : | : | : | : |
Description
Putative F-box/kelch-repeat protein At2g29820 [Source:UniProtKB/Swiss-Prot;Acc:O82374]
Coordinates
chr2:-:12728362..12729528
Molecular Weight (calculated)
44144.3 Da
IEP (calculated)
6.724
GRAVY (calculated)
0.020
Length
388 amino acids
Sequence
(BLAST)
(BLAST)
001: MVVLHEILDG PNGDDPNNNP QEGEDNQNEN PQEEVENLRN LLELPEELIE RLIAHIPRCY YPYISLVSRD FRQVITSDKL FRTRSLLGFN EPVLYALIGS
101: TQTPLSWFFL RWSNFPLELH RIRSLPTVLL GAAVVTIGYK MYVMGGTIGL NHHVSTVIVI DCRNHTWNYL PDMKRARYRA AAGEIGGRIY VIGGRKKQDA
201: DWVEVFNATT ESWETVSSVC PNDASANGVF STYVVMQGRI FALDRWGCFA YKPVQGLWQS WGVASELTRF WHPLSSFTVI GELLYTVDLT CSLGHPIVVY
301: YPNESVWRPV MGFHLPILSQ CWSKIANFGG KLVIFCTCLG TFKHILCIVI ALEARQGGHI WGVVESNSRV FRDDMMLPYI RLCQTVTF
101: TQTPLSWFFL RWSNFPLELH RIRSLPTVLL GAAVVTIGYK MYVMGGTIGL NHHVSTVIVI DCRNHTWNYL PDMKRARYRA AAGEIGGRIY VIGGRKKQDA
201: DWVEVFNATT ESWETVSSVC PNDASANGVF STYVVMQGRI FALDRWGCFA YKPVQGLWQS WGVASELTRF WHPLSSFTVI GELLYTVDLT CSLGHPIVVY
301: YPNESVWRPV MGFHLPILSQ CWSKIANFGG KLVIFCTCLG TFKHILCIVI ALEARQGGHI WGVVESNSRV FRDDMMLPYI RLCQTVTF
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.