Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT2G29830.1 | Thale cress | cytosol | 65.42 | 40.99 |
| AT2G29820.1 | Thale cress | cytosol | 64.58 | 39.95 |
| AT2G29810.1 | Thale cress | cytosol | 55.0 | 34.46 |
| Bra030283.1-P | Field mustard | cytosol | 40.42 | 33.92 |
| AT2G29780.1 | Thale cress | cytosol | 52.08 | 31.41 |
| AT2G29770.1 | Thale cress | cytosol | 49.58 | 30.75 |
| CDY15875 | Canola | cytosol | 38.33 | 30.36 |
| AT2G29600.1 | Thale cress | nucleus | 50.0 | 28.92 |
| AT2G29800.1 | Thale cress | cytosol | 48.33 | 28.02 |
| Bra030282.1-P | Field mustard | cytosol | 33.33 | 24.77 |
| AT1G19460.1 | Thale cress | cytosol | 42.08 | 24.28 |
| CDX99573 | Canola | cytosol | 32.5 | 24.22 |
| AT1G19470.1 | Thale cress | cytosol | 41.25 | 24.03 |
| AT2G21680.1 | Thale cress | cytosol | 42.08 | 23.54 |
| AT2G21950.1 | Thale cress | cytosol | 34.17 | 22.04 |
| CDX99574 | Canola | cytosol | 30.0 | 21.18 |
| AT4G14905.2 | Thale cress | plastid | 31.67 | 20.43 |
| KRH64149 | Soybean | cytosol | 30.42 | 20.33 |
| KRH53797 | Soybean | cytosol | 29.58 | 19.61 |
| AT4G39240.1 | Thale cress | cytosol, nucleus, peroxisome | 30.42 | 19.47 |
| PGSC0003DMT400042717 | Potato | cytosol | 28.75 | 19.33 |
| Solyc04g051870.1.1 | Tomato | extracellular | 28.33 | 19.05 |
| VIT_07s0031g01580.t01 | Wine grape | plastid | 28.33 | 18.84 |
| AT3G27910.1 | Thale cress | extracellular, golgi | 21.67 | 17.69 |
| GSMUA_Achr2P14860_001 | Banana | cytosol, endoplasmic reticulum, plastid | 26.67 | 17.16 |
| TraesCS2A01G111200.1 | Wheat | cytosol, endoplasmic reticulum, plasma membrane | 23.33 | 14.85 |
| TraesCS2B01G130200.1 | Wheat | cytosol, endoplasmic reticulum, plastid | 23.33 | 14.85 |
| EER97716 | Sorghum | plastid | 23.33 | 14.81 |
| Zm00001d007152_P001 | Maize | plastid | 22.5 | 14.36 |
| Os07t0673700-01 | Rice | cytosol | 22.5 | 14.25 |
| KRG89620 | Soybean | cytosol | 6.25 | 11.19 |
| HORVU2Hr1G019280.1 | Barley | cytosol | 17.5 | 11.08 |
| TraesCS2D01G111900.1 | Wheat | nucleus | 16.67 | 8.79 |
| CDY15873 | Canola | cytosol | 2.08 | 3.07 |
Protein Annotations
| Gene3D:2.120.10.80 | MapMan:35.1 | EntrezGene:817536 | ProteinID:AAC35215.1 | ProteinID:AEC08312.1 | ArrayExpress:AT2G29860 |
| EnsemblPlantsGene:AT2G29860 | RefSeq:AT2G29860 | TAIR:AT2G29860 | RefSeq:AT2G29860-TAIR-G | EnsemblPlants:AT2G29860.1 | TAIR:AT2G29860.1 |
| Unigene:At.66276 | InterPro:F-box_dom | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | InterPro:IPR001810 |
| InterPro:IPR015915 | InterPro:Kelch-typ_b-propeller | InterPro:Kelch_1 | RefSeq:NP_180547.1 | UniProt:O82370 | PFAM:PF00646 |
| PFAM:PF01344 | PANTHER:PTHR24414 | PANTHER:PTHR24414:SF23 | SMART:SM00612 | SUPFAM:SSF117281 | UniParc:UPI00000A6FA1 |
Description
Putative F-box/kelch-repeat protein At2g29860 [Source:UniProtKB/Swiss-Prot;Acc:O82370]
Coordinates
chr2:-:12737666..12738388
Molecular Weight (calculated)
27328.0 Da
IEP (calculated)
7.109
GRAVY (calculated)
-0.072
Length
240 amino acids
Sequence
(BLAST)
(BLAST)
001: MVLLSEIPGG SNGDDPNMNP QELPEELIES IVAPIPRCYY PSLSLLSRAF RHVITSQQLF VTRSGLGFKE PVLYAFIGCT PYTTPRWFIL RRSNIPLQLR
101: RLNSLPHMFP GAAVVTIGYK IYVMGGYNYQ PVSTVIIIDC RFHTWHYLQD MQRARYHATP GVIDGRIYVI GGRKKQDADW VEVFDVTTES WETVPTQCPN
201: EASENGLFVT YAVMQGRILG VFLLTNQDKV YGSHWELYVS
101: RLNSLPHMFP GAAVVTIGYK IYVMGGYNYQ PVSTVIIIDC RFHTWHYLQD MQRARYHATP GVIDGRIYVI GGRKKQDADW VEVFDVTTES WETVPTQCPN
201: EASENGLFVT YAVMQGRILG VFLLTNQDKV YGSHWELYVS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.