Factsheet for VIT_07s0031g01580.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 5
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_18s0001g14860.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G21950.1	VIT_18s0001g14860.t01	AT5G42190.1	12795696
AT4G39240.1	VIT_18s0001g14860.t01	AT5G42190.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400042717	Potato	cytosol	62.6	63.31
Solyc04g051870.1.1	Tomato	extracellular	62.05	62.75
KRG89620	Soybean	cytosol	23.27	62.69
KRH53797	Soybean	cytosol	60.94	60.77
KRH64149	Soybean	cytosol	59.83	60.17
CDY46225	Canola	cytosol	56.23	55.01
CDY15853	Canola	cytosol	55.68	54.47
Bra030269.1-P	Field mustard	cytosol	55.4	54.2
AT2G21950.1	Thale cress	cytosol	52.91	51.34
GSMUA_Achr2P14860_001	Banana	cytosol, endoplasmic reticulum, plastid	49.86	48.26
TraesCS2B01G130200.1	Wheat	cytosol, endoplasmic reticulum, plastid	41.27	39.52
EER97716	Sorghum	plastid	41.27	39.42
Os07t0673700-01	Rice	cytosol	41.27	39.31
Zm00001d007152_P001	Maize	plastid	40.72	39.1
TraesCS2A01G111200.1	Wheat	cytosol, endoplasmic reticulum, plasma membrane	40.72	38.99
Bra031212.1-P	Field mustard	cytosol	35.73	33.16
CDY59764	Canola	cytosol	35.46	32.99
CDY13795	Canola	cytosol	35.46	32.65
HORVU2Hr1G019280.1	Barley	cytosol	34.07	32.45
Bra025310.1-P	Field mustard	cytosol, plastid	32.69	31.64
CDY69098	Canola	cytosol, plastid	32.69	31.64
AT3G27910.1	Thale cress	extracellular, golgi	25.76	31.63
CDY44445	Canola	cytosol	32.41	31.28
CDY15078	Canola	extracellular	24.1	30.74
CDY13796	Canola	cytosol	32.41	30.63
CDY15875	Canola	cytosol	25.48	30.36
AT4G14905.2	Thale cress	plastid	30.75	29.84
CDX99573	Canola	cytosol	26.59	29.81
AT4G39240.1	Thale cress	cytosol, nucleus, peroxisome	30.47	29.33
CDY56757	Canola	plastid	30.47	29.26
Bra033610.1-P	Field mustard	plastid	30.19	28.99
AT2G29810.1	Thale cress	cytosol	30.47	28.72
Bra030282.1-P	Field mustard	cytosol	25.48	28.48
AT2G29860.1	Thale cress	cytosol	18.84	28.33
TraesCS2D01G111900.1	Wheat	nucleus	34.63	27.47
Bra030283.1-P	Field mustard	cytosol	21.33	26.92
Bra033606.1-P	Field mustard	cytosol	29.64	26.62
CDX99574	Canola	cytosol	24.93	26.47
AT2G29830.1	Thale cress	cytosol	27.15	25.59
AT2G29780.1	Thale cress	cytosol	27.7	25.13
AT2G29770.1	Thale cress	cytosol	26.87	25.06
AT2G29820.1	Thale cress	cytosol	26.87	25.0
CDY15873	Canola	cytosol	11.08	24.54
AT1G19460.1	Thale cress	cytosol	27.98	24.28
AT1G19470.1	Thale cress	cytosol	27.7	24.27
AT2G21680.1	Thale cress	cytosol	28.81	24.24
AT2G29600.1	Thale cress	nucleus	27.7	24.1
AT2G29800.1	Thale cress	cytosol	26.04	22.71
CDX72708	Canola	plastid	32.41	15.52

Protein Annotations

EntrezGene:100252600	wikigene:100252600	Gene3D:2.120.10.80	MapMan:35.1	ProteinID:CCB47118	ProteinID:CCB47118.1
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	UniProt:F6H4A7	EMBL:FN595233	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR001810	InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	InterPro:Kelch_1	EntrezGene:LOC100252600
wikigene:LOC100252600	PFAM:PF00646	PFAM:PF01344	PANTHER:PTHR24414	PANTHER:PTHR24414:SF23	SMART:SM00256
SMART:SM00612	SUPFAM:SSF117281	SUPFAM:SSF81383	UniParc:UPI0001983A18	ArrayExpress:VIT_07s0031g01580	EnsemblPlantsGene:VIT_07s0031g01580
EnsemblPlants:VIT_07s0031g01580.t01	RefSeq:XP_002276023	RefSeq:XP_002276023.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr7:+:17680553..17683530

Molecular Weight (calculated)

38773.8 Da

IEP (calculated)

7.814

GRAVY (calculated)

0.162

Length

361 amino acids

Sequence
(BLAST)

001: MSSPSSASSS SSSSSSSSSS DLIPNLPDDV ALQCIARVPR SRHPHLLLVC KSWRSILNSP DFFSTRSLLN CMQHSLYLIV RVNCTLKWFV LNQNPRILAS
101: LPPNPSPAIG SAFAAIGSKI FVLGGSVNDV ASPTVQVFDC RFGTWELGPR MRVGREFAAA GVVGRKIYVM GGCLVDTWAK SANWAEVFDP AAGRWAGVES
201: PVEVREKWMH ASAVVEEKIY AMADRGGVVF EPGTAEWGGV STELDLGWRG RACVVDGVLY CYDYLGKIRG FDVKEGLWKE LKGLEKGLPK FLCGATMANV
301: GGNLVVLWEG KGNGKEMEIS CAEIAIQKCS DGGLRGSIVW SDVILSVPIG SAIVHCLAVA V

Best Arabidopsis Sequence Match ( AT2G21950.1 )
(BLAST)

001: MAATTSSGDE PPETKSPAQL IPLLSEDVAL SCLARVPRCH YPILSLVSKT FRSLPTSPLL YATRALVGAT ENILYVAIRI PPESGACWFT LLHRTLSNST
101: NSKMLVPIPS CPSPSLVGSA YVVVDSEIYV IGGSIRDVPS SSVWVLDCRF HTWRRVSNMR VGREFAAAGV IDGKIYVIGG CVVDNWARSI NWAEMFDIKT
201: QTWEPVASPG MEVREKWMHA SAVMEGKVYA MADRNGVVYE PKEKKWEMPE KRLDLGWRGR ACVIENILYC YDYLGKIRGY DPKERIWREL KGVESLPKFL
301: CGATMANRGG KLTVLWEGKA GSGGSRRMEI WCAEIDVGRR GEREIWGKIE WSGTVLTVPN ESAIVNCLAA TV

Arabidopsis Description

SKIP6F-box/kelch-repeat protein SKIP6 [Source:UniProtKB/Swiss-Prot;Acc:Q9SJ04]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.