CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
BaCelLo:	plastid
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX68112
CDX73212
CDX80590
CDX85931
CDX87650
CDY13521
CDY39073

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G39240.1	CDX68112	AT1G75950.1	21798944
AT4G39240.1	CDX73212	AT1G75950.1	21798944
AT4G39240.1	CDX80590	AT1G75950.1	21798944
AT4G39240.1	CDX85931	AT1G75950.1	21798944
AT4G39240.1	CDX87650	AT1G75950.1	21798944
AT4G39240.1	CDY13521	AT1G75950.1	21798944
AT4G39240.1	CDY39073	AT1G75950.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra033610.1-P	Field mustard	plastid	95.21	95.21
AT4G39240.1	Thale cress	cytosol, nucleus, peroxisome	60.11	60.27
AT4G14905.2	Thale cress	plastid	48.94	49.46
CDY44445	Canola	cytosol	46.81	47.06
CDY69098	Canola	cytosol, plastid	46.28	46.65
CDX72708	Canola	plastid	82.98	41.38
CDY15853	Canola	cytosol	39.63	40.38
CDY46225	Canola	cytosol	37.77	38.48
CDY13796	Canola	cytosol	35.37	34.82
CDY59764	Canola	cytosol	35.9	34.79
CDY13795	Canola	cytosol	35.9	34.44
CDX99573	Canola	cytosol	29.26	34.16
CDY15875	Canola	cytosol	26.86	33.33
KRG89620	Soybean	cytosol	11.44	32.09
PGSC0003DMT400042717	Potato	cytosol	29.79	31.37
CDY15873	Canola	cytosol	13.56	31.29
CDX99574	Canola	cytosol	28.19	31.18
Solyc04g051870.1.1	Tomato	extracellular	29.52	31.09
VIT_07s0031g01580.t01	Wine grape	plastid	29.26	30.47
KRH53797	Soybean	cytosol	29.26	30.39
KRH64149	Soybean	cytosol	28.72	30.08
CDY15078	Canola	extracellular	21.54	28.62
GSMUA_Achr2P14860_001	Banana	cytosol, endoplasmic reticulum, plastid	26.06	26.27
EER97716	Sorghum	plastid	25.27	25.13
Zm00001d007152_P001	Maize	plastid	24.73	24.73
TraesCS2A01G111200.1	Wheat	cytosol, endoplasmic reticulum, plasma membrane	24.2	24.14
TraesCS2B01G130200.1	Wheat	cytosol, endoplasmic reticulum, plastid	23.67	23.61
Os07t0673700-01	Rice	cytosol	23.4	23.22
HORVU2Hr1G019280.1	Barley	cytosol	19.95	19.79
TraesCS2D01G111900.1	Wheat	nucleus	19.68	16.26

Protein Annotations

EnsemblPlants:CDY56757	EnsemblPlantsGene:GSBRNA2T00020053001	Gene3D:2.120.10.80	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:F-box_dom	InterPro:IPR001810	InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	InterPro:Kelch_1	PANTHER:PTHR24414
PANTHER:PTHR24414:SF23	PFAM:PF00646	PFAM:PF01344	ProteinID:CDY56757	ProteinID:CDY56757.1	SEG:seg
SMART:SM00612	SUPFAM:SSF117281	UniParc:UPI0004EF404D	UniProt:A0A078IXS6	MapMan:35.1	:

Description

BnaA06g40700DBnaA06g40700D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IXS6]

Coordinates

chrLK033516:+:29697..30827

Molecular Weight (calculated)

42543.7 Da

IEP (calculated)

9.303

GRAVY (calculated)

-0.138

Length

376 amino acids

Sequence
(BLAST)

001: MHLLTVTNSS GSNAEKPPQK KKKVHGPRPL SLLLLPDELS LNCLARVPRC YHPSVSMVST TMRRLIASPK IYVERSFLRR TENVLYVAIR SCVTETPRWY
101: TLNLKPFGQQ ESGVVNHSLV PVPSFPAVPP WGMSIVTVGS EIYVIGGCVN DKMVSTVFVI DCPSYTRRFL PRMKQARACS AAGIVGGKLY VIGGCNPRSS
201: NWVEAFDLKT QTWETVTVVH NLEVYEKMIR SFVMDGKICI MDRKSSFAYD PKEGRLERDP LLNGQWSVGS CVIDDKLYAF GRRNTIMEFD PVARFWSQVR
301: GLEDLPDKTE GSKMVNYGGK LVILVNLQRR STEIWYTEIE LERREGGEVW GTVLWSNRVL AFEDSYVILR SLAVSF

Best Arabidopsis Sequence Match ( AT4G39240.1 )
(BLAST)

001: MPFSAASSSS VSSIAEEPPP KKQHDPSPSC SSYLLLLPDE IILNCLARLP KCYYPVISLV SKTFRRLIAS PEIYVERSLL RRTERVLYVV LRSHATETPR
101: WYTLNFKPFG NDSNNHRLVP IPSFPSIPCW GMSIVAIDSE IYVLGGCIDN ELVSTGFVVE CPSHTCRLLP SMKQARGCAA VGFFDGKLYV IGGCNPLSVN
201: WVEAFDLKTQ TWESGLGVNN VEMHDLTIRS FAIDDKIYIM DRKNSFVYDP KEGTLETDEL LDTQWSVGSC VIDGKIYTFG SKNRIWVFDP IAMVWDRLKG
301: LDDLPDKRDG SRMSNLGGNL AIMFNLEKGS TKICCTEIRL ERREGGKIWG TVLWSNIVIT LKEPSTIVRC LTVTV

Arabidopsis Description

F-box/kelch-repeat protein At4g39240 [Source:UniProtKB/Swiss-Prot;Acc:Q9T031]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.