Factsheet for GSMUA_Achr2P14860_001

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, plastid, cytosol

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 1
endoplasmic reticulum 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG89620	Soybean	cytosol	19.57	54.48
TraesCS2B01G130200.1	Wheat	cytosol, endoplasmic reticulum, plastid	52.81	52.25
TraesCS2A01G111200.1	Wheat	cytosol, endoplasmic reticulum, plasma membrane	52.28	51.72
Os07t0673700-01	Rice	cytosol	52.01	51.19
EER97716	Sorghum	plastid	51.47	50.79
Zm00001d007152_P001	Maize	plastid	50.67	50.27
VIT_07s0031g01580.t01	Wine grape	plastid	48.26	49.86
KRH64149	Soybean	cytosol	47.19	49.03
Solyc04g051870.1.1	Tomato	extracellular	46.11	48.18
KRH53797	Soybean	cytosol	46.65	48.07
PGSC0003DMT400042717	Potato	cytosol	45.84	47.9
HORVU2Hr1G019280.1	Barley	cytosol	45.31	44.59
Bra030269.1-P	Field mustard	cytosol	43.43	43.9
CDY15853	Canola	cytosol	43.16	43.63
CDY46225	Canola	cytosol	42.63	43.09
AT2G21950.1	Thale cress	cytosol	41.29	41.4
TraesCS2D01G111900.1	Wheat	nucleus	43.7	35.82
CDY15875	Canola	cytosol	23.86	29.37
CDX99573	Canola	cytosol	23.59	27.33
AT2G29860.1	Thale cress	cytosol	17.16	26.67
Bra030283.1-P	Field mustard	cytosol	20.38	26.57
CDX99574	Canola	cytosol	24.13	26.47
CDY56757	Canola	plastid	26.27	26.06
AT3G27910.1	Thale cress	extracellular, golgi	20.38	25.85
Bra030282.1-P	Field mustard	cytosol	22.25	25.7
AT2G29830.1	Thale cress	cytosol	26.27	25.59
Bra033610.1-P	Field mustard	plastid	25.74	25.53
CDY13796	Canola	cytosol	26.01	25.39
CDY59764	Canola	cytosol	26.27	25.26
AT2G29820.1	Thale cress	cytosol	26.01	25.0
CDY69098	Canola	cytosol, plastid	24.93	24.93
Bra025310.1-P	Field mustard	cytosol, plastid	24.93	24.93
CDY44445	Canola	cytosol	24.93	24.87
AT2G29810.1	Thale cress	cytosol	25.2	24.54
CDY13795	Canola	cytosol	25.74	24.49
AT4G14905.2	Thale cress	plastid	24.4	24.46
Bra031212.1-P	Field mustard	cytosol	25.47	24.42
AT2G29780.1	Thale cress	cytosol	25.74	24.12
AT2G29770.1	Thale cress	cytosol	24.93	24.03
CDY15078	Canola	extracellular	17.69	23.32
CDY15873	Canola	cytosol	10.19	23.31
AT4G39240.1	Thale cress	cytosol, nucleus, peroxisome	23.32	23.2
Bra033606.1-P	Field mustard	cytosol	24.66	22.89
AT2G21680.1	Thale cress	cytosol	25.47	22.14
AT2G29600.1	Thale cress	nucleus	23.86	21.45
AT1G19470.1	Thale cress	cytosol	23.32	21.12
AT2G29800.1	Thale cress	cytosol	23.32	21.01
AT1G19460.1	Thale cress	cytosol	23.32	20.91
CDX72708	Canola	plastid	26.54	13.13

Protein Annotations

EnsemblPlants:GSMUA_Achr2P14860_001	EnsemblPlants:GSMUA_Achr2T14860_001	EnsemblPlantsGene:GSMUA_Achr2G14860_001	Gene3D:2.120.10.80	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	InterPro:IPR015915	InterPro:Kelch-typ_b-propeller
InterPro:Kelch_1	PANTHER:PTHR24414	PANTHER:PTHR24414:SF23	PFAM:PF00646	PFAM:PF01344	SEG:seg
SUPFAM:SSF117281	SUPFAM:SSF81383	UniParc:UPI000296CBCD	UniProt:M0S827	MapMan:35.1	:

Description

Putative F-box/kelch-repeat protein SKIP6 [Source:GMGC_GENE;Acc:GSMUA_Achr2G14860_001]

Coordinates

chr2:+:16456865..16457986

Molecular Weight (calculated)

39212.7 Da

IEP (calculated)

8.055

GRAVY (calculated)

0.168

Length

373 amino acids

Sequence
(BLAST)

001: MTDPSDVSAA ASAAGGFIPD LPDDIAVRCI ARVPRSHHPA LALVSRSWRS LLRSPLLSAV RSHLAVTDPP VLALNLRSPT DQAPWFLLDP LLRRSGKKSP
101: PPLRLPPPPL PAIGSACAAL GPALFLLGGS VAGVPSPAVQ VLDARLRRWS LVPRMSAARE FAAAAVLGGR IYAIGGCLPP ADAWAESLDP AIGPTGGGWA
201: VVPSPPLIRE KWMHGCAVLG GRILAVADRG GVVYDPVAPA GEARWGPVPP VLDNGWRGRA AAVGGILYSY DFLGKIRGYD LESNEWKQVE GMEKELPKFL
301: CGATLANLGG LLCLVWEGKD LASGNKEMVI EWAGIEVSKT TDGKLQGSLL WQEPVVLDAP KGSSIAHCIA LEL

Best Arabidopsis Sequence Match ( AT2G21950.1 )
(BLAST)

001: MAATTSSGDE PPETKSPAQL IPLLSEDVAL SCLARVPRCH YPILSLVSKT FRSLPTSPLL YATRALVGAT ENILYVAIRI PPESGACWFT LLHRTLSNST
101: NSKMLVPIPS CPSPSLVGSA YVVVDSEIYV IGGSIRDVPS SSVWVLDCRF HTWRRVSNMR VGREFAAAGV IDGKIYVIGG CVVDNWARSI NWAEMFDIKT
201: QTWEPVASPG MEVREKWMHA SAVMEGKVYA MADRNGVVYE PKEKKWEMPE KRLDLGWRGR ACVIENILYC YDYLGKIRGY DPKERIWREL KGVESLPKFL
301: CGATMANRGG KLTVLWEGKA GSGGSRRMEI WCAEIDVGRR GEREIWGKIE WSGTVLTVPN ESAIVNCLAA TV

Arabidopsis Description

SKIP6F-box/kelch-repeat protein SKIP6 [Source:UniProtKB/Swiss-Prot;Acc:Q9SJ04]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.