Factsheet for Zm00001d007152_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 1
plastid 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
MultiLoc:	cytosol
PProwler:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER97716	Sorghum	plastid	93.09	92.59
Os07t0673700-01	Rice	cytosol	79.26	78.63
TraesCS2B01G130200.1	Wheat	cytosol, endoplasmic reticulum, plastid	74.73	74.54
TraesCS2A01G111200.1	Wheat	cytosol, endoplasmic reticulum, plasma membrane	73.94	73.74
HORVU2Hr1G019280.1	Barley	cytosol	63.03	62.53
GSMUA_Achr2P14860_001	Banana	cytosol, endoplasmic reticulum, plastid	50.27	50.67
TraesCS2D01G111900.1	Wheat	nucleus	57.71	47.69
KRG89620	Soybean	cytosol	16.22	45.52
KRH53797	Soybean	cytosol	39.63	41.16
VIT_07s0031g01580.t01	Wine grape	plastid	39.1	40.72
KRH64149	Soybean	cytosol	37.77	39.55
Bra030269.1-P	Field mustard	cytosol	38.56	39.3
CDY46225	Canola	cytosol	38.3	39.02
CDY15853	Canola	cytosol	38.3	39.02
Solyc04g051870.1.1	Tomato	extracellular	36.44	38.38
PGSC0003DMT400042717	Potato	cytosol	36.17	38.1
AT2G21950.1	Thale cress	cytosol	36.97	37.37
CDY15875	Canola	cytosol	21.54	26.73
Bra030282.1-P	Field mustard	cytosol	22.07	25.7
Bra030283.1-P	Field mustard	cytosol	19.41	25.52
CDX99573	Canola	cytosol	21.54	25.16
CDY56757	Canola	plastid	24.73	24.73
CDX99574	Canola	cytosol	22.34	24.71
Bra033610.1-P	Field mustard	plastid	24.2	24.2
CDY59764	Canola	cytosol	24.47	23.71
CDY13796	Canola	cytosol	23.94	23.56
CDY15078	Canola	extracellular	17.55	23.32
AT2G29830.1	Thale cress	cytosol	23.14	22.72
CDY15873	Canola	cytosol	9.84	22.7
Bra031212.1-P	Field mustard	cytosol	23.4	22.62
AT2G29860.1	Thale cress	cytosol	14.36	22.5
CDY13795	Canola	cytosol	23.4	22.45
AT3G27910.1	Thale cress	extracellular, golgi	17.55	22.45
CDY44445	Canola	cytosol	22.07	22.19
Bra025310.1-P	Field mustard	cytosol, plastid	21.81	21.98
CDY69098	Canola	cytosol, plastid	21.81	21.98
Bra033606.1-P	Field mustard	cytosol	23.4	21.89
AT4G39240.1	Thale cress	cytosol, nucleus, peroxisome	21.54	21.6
AT4G14905.2	Thale cress	plastid	21.28	21.51
AT2G29770.1	Thale cress	cytosol	21.81	21.19
AT1G19460.1	Thale cress	cytosol	23.4	21.15
AT2G29810.1	Thale cress	cytosol	21.54	21.15
AT1G19470.1	Thale cress	cytosol	22.61	20.63
AT2G29820.1	Thale cress	cytosol	21.28	20.62
AT2G29780.1	Thale cress	cytosol	21.81	20.6
AT2G21680.1	Thale cress	cytosol	22.61	19.81
AT2G29600.1	Thale cress	nucleus	20.48	18.55
AT2G29800.1	Thale cress	cytosol	19.95	18.12
CDX72708	Canola	plastid	25.8	12.86

Protein Annotations

EntrezGene:100279526	Gene3D:2.120.10.80	MapMan:35.1	EMBL:BT063004	UniProt:C0P3Y5	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	InterPro:Kelch_1	ProteinID:ONM26156.1
PFAM:PF01344	PANTHER:PTHR24414	PANTHER:PTHR24414:SF23	SMART:SM00612	SUPFAM:SSF117281	UniParc:UPI0001948FEE
EnsemblPlantsGene:Zm00001d007152	EnsemblPlants:Zm00001d007152_P001	EnsemblPlants:Zm00001d007152_T001	SEG:seg	:	:

Description

F-box/kelch-repeat protein SKIP6

Coordinates

chr2:+:223371157..223372287

Molecular Weight (calculated)

40114.6 Da

IEP (calculated)

8.486

GRAVY (calculated)

0.116

Length

376 amino acids

Sequence
(BLAST)

001: MSAEPTSPPL STAQVRGSLI PPLPDDLAVH CIALLPRAAH PSLALVSRAF HALLCRHPEP LLAARRTLRC SEPHVLLSLR PPSSASPIFF LLLPHPGWPP
101: LPLPSPPVPV SSSASAATDG ARLFLVGGSV SAVPSASVQI LDPRARSWSA GPRLSSTREF AAAVAHSGAL FVAGGCIPSS PFWAEALDLS TPNAKWRAVA
201: SPAHLREKWM HGCASLDGKV VVVADRGGLS YDPSAPPAEA WAPVSPVLDM GWKGRAAVVE GILYSYDYLG QVKGYDPYTD SWSTVEGLEG ELPKFLCGAT
301: LADVGGLLYL VWEGKWKGKL KGKMEMRSMV VIEWASIQIT RVQEGRLRGK VVSRDTVLFP DMPRGSTITH CIALEL

Best Arabidopsis Sequence Match ( AT2G21950.1 )
(BLAST)

001: MAATTSSGDE PPETKSPAQL IPLLSEDVAL SCLARVPRCH YPILSLVSKT FRSLPTSPLL YATRALVGAT ENILYVAIRI PPESGACWFT LLHRTLSNST
101: NSKMLVPIPS CPSPSLVGSA YVVVDSEIYV IGGSIRDVPS SSVWVLDCRF HTWRRVSNMR VGREFAAAGV IDGKIYVIGG CVVDNWARSI NWAEMFDIKT
201: QTWEPVASPG MEVREKWMHA SAVMEGKVYA MADRNGVVYE PKEKKWEMPE KRLDLGWRGR ACVIENILYC YDYLGKIRGY DPKERIWREL KGVESLPKFL
301: CGATMANRGG KLTVLWEGKA GSGGSRRMEI WCAEIDVGRR GEREIWGKIE WSGTVLTVPN ESAIVNCLAA TV

Arabidopsis Description

SKIP6F-box/kelch-repeat protein SKIP6 [Source:UniProtKB/Swiss-Prot;Acc:Q9SJ04]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.