Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra030269.1-P | Field mustard | cytosol | 80.65 | 81.3 |
| CDY15853 | Canola | cytosol | 80.38 | 81.03 |
| CDY46225 | Canola | cytosol | 78.76 | 79.4 |
| KRG89620 | Soybean | cytosol | 20.97 | 58.21 |
| KRH53797 | Soybean | cytosol | 55.38 | 56.91 |
| KRH64149 | Soybean | cytosol | 53.23 | 55.15 |
| Solyc04g051870.1.1 | Tomato | extracellular | 52.42 | 54.62 |
| PGSC0003DMT400042717 | Potato | cytosol | 52.42 | 54.62 |
| VIT_07s0031g01580.t01 | Wine grape | plastid | 51.34 | 52.91 |
| GSMUA_Achr2P14860_001 | Banana | cytosol, endoplasmic reticulum, plastid | 41.4 | 41.29 |
| EER97716 | Sorghum | plastid | 39.25 | 38.62 |
| TraesCS2B01G130200.1 | Wheat | cytosol, endoplasmic reticulum, plastid | 37.63 | 37.14 |
| Zm00001d007152_P001 | Maize | plastid | 37.37 | 36.97 |
| Os07t0673700-01 | Rice | cytosol | 37.63 | 36.94 |
| AT4G14905.2 | Thale cress | plastid | 36.83 | 36.83 |
| AT4G39240.1 | Thale cress | cytosol, nucleus, peroxisome | 37.1 | 36.8 |
| AT3G27910.1 | Thale cress | extracellular, golgi | 29.03 | 36.73 |
| TraesCS2A01G111200.1 | Wheat | cytosol, endoplasmic reticulum, plasma membrane | 37.1 | 36.6 |
| AT2G29860.1 | Thale cress | cytosol | 22.04 | 34.17 |
| AT2G29810.1 | Thale cress | cytosol | 34.68 | 33.68 |
| AT2G29830.1 | Thale cress | cytosol | 33.87 | 32.9 |
| HORVU2Hr1G019280.1 | Barley | cytosol | 32.8 | 32.19 |
| AT2G29770.1 | Thale cress | cytosol | 33.06 | 31.78 |
| AT1G19470.1 | Thale cress | cytosol | 34.41 | 31.07 |
| AT1G19460.1 | Thale cress | cytosol | 33.87 | 30.29 |
| AT2G29780.1 | Thale cress | cytosol | 32.26 | 30.15 |
| AT2G21680.1 | Thale cress | cytosol | 34.41 | 29.84 |
| AT2G29600.1 | Thale cress | nucleus | 33.06 | 29.64 |
| AT2G29820.1 | Thale cress | cytosol | 30.11 | 28.87 |
| AT2G29800.1 | Thale cress | cytosol | 30.11 | 27.05 |
| TraesCS2D01G111900.1 | Wheat | nucleus | 31.45 | 25.71 |
Protein Annotations
| Gene3D:2.120.10.80 | MapMan:35.1 | EntrezGene:816731 | ProteinID:AAD20412.1 | ProteinID:AEC07245.1 | EMBL:AF263382 |
| ArrayExpress:AT2G21950 | EnsemblPlantsGene:AT2G21950 | RefSeq:AT2G21950 | TAIR:AT2G21950 | RefSeq:AT2G21950-TAIR-G | EnsemblPlants:AT2G21950.1 |
| TAIR:AT2G21950.1 | EMBL:AY091137 | EMBL:AY122967 | Unigene:At.50089 | InterPro:F-box_dom | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 |
| GO:GO:0016567 | GO:GO:0019538 | InterPro:IPR001810 | InterPro:IPR015915 | InterPro:Kelch-typ_b-propeller | InterPro:Kelch_1 |
| RefSeq:NP_565522.1 | PFAM:PF00646 | PFAM:PF01344 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 |
| PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 |
| PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 |
| PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 |
| PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 |
| PANTHER:PTHR24414 | PANTHER:PTHR24414:SF23 | UniProt:Q9SJ04 | Symbol:SKIP6 | SMART:SM00612 | SUPFAM:SSF117281 |
| UniParc:UPI000009CDBA | SEG:seg | : | : | : | : |
Description
SKIP6F-box/kelch-repeat protein SKIP6 [Source:UniProtKB/Swiss-Prot;Acc:Q9SJ04]
Coordinates
chr2:-:9353174..9354645
Molecular Weight (calculated)
41296.0 Da
IEP (calculated)
8.331
GRAVY (calculated)
-0.078
Length
372 amino acids
Sequence
(BLAST)
(BLAST)
001: MAATTSSGDE PPETKSPAQL IPLLSEDVAL SCLARVPRCH YPILSLVSKT FRSLPTSPLL YATRALVGAT ENILYVAIRI PPESGACWFT LLHRTLSNST
101: NSKMLVPIPS CPSPSLVGSA YVVVDSEIYV IGGSIRDVPS SSVWVLDCRF HTWRRVSNMR VGREFAAAGV IDGKIYVIGG CVVDNWARSI NWAEMFDIKT
201: QTWEPVASPG MEVREKWMHA SAVMEGKVYA MADRNGVVYE PKEKKWEMPE KRLDLGWRGR ACVIENILYC YDYLGKIRGY DPKERIWREL KGVESLPKFL
301: CGATMANRGG KLTVLWEGKA GSGGSRRMEI WCAEIDVGRR GEREIWGKIE WSGTVLTVPN ESAIVNCLAA TV
101: NSKMLVPIPS CPSPSLVGSA YVVVDSEIYV IGGSIRDVPS SSVWVLDCRF HTWRRVSNMR VGREFAAAGV IDGKIYVIGG CVVDNWARSI NWAEMFDIKT
201: QTWEPVASPG MEVREKWMHA SAVMEGKVYA MADRNGVVYE PKEKKWEMPE KRLDLGWRGR ACVIENILYC YDYLGKIRGY DPKERIWREL KGVESLPKFL
301: CGATMANRGG KLTVLWEGKA GSGGSRRMEI WCAEIDVGRR GEREIWGKIE WSGTVLTVPN ESAIVNCLAA TV
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.