Factsheet for Solyc04g051870.1.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

plastid 3
cytosol 3
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	plastid
ChloroP:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	plastid
WoLF PSORT:	cytosol
YLoc:	cytosol

extracellular: 29876421

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400042717	Potato	cytosol	97.76	97.76
VIT_07s0031g01580.t01	Wine grape	plastid	62.75	62.05
KRG89620	Soybean	cytosol	22.41	59.7
KRH53797	Soybean	cytosol	56.58	55.8
KRH64149	Soybean	cytosol	55.74	55.43
CDY46225	Canola	cytosol	56.86	55.01
CDY15853	Canola	cytosol	55.18	53.39
Bra030269.1-P	Field mustard	cytosol	55.18	53.39
AT2G21950.1	Thale cress	cytosol	54.62	52.42
GSMUA_Achr2P14860_001	Banana	cytosol, endoplasmic reticulum, plastid	48.18	46.11
TraesCS2B01G130200.1	Wheat	cytosol, endoplasmic reticulum, plastid	41.18	38.99
TraesCS2A01G111200.1	Wheat	cytosol, endoplasmic reticulum, plasma membrane	40.62	38.46
Os07t0673700-01	Rice	cytosol	40.06	37.73
EER97716	Sorghum	plastid	38.94	36.77
Zm00001d007152_P001	Maize	plastid	38.38	36.44
HORVU2Hr1G019280.1	Barley	cytosol	34.17	32.19
Bra025310.1-P	Field mustard	cytosol, plastid	33.05	31.64
CDY69098	Canola	cytosol, plastid	33.05	31.64
CDY15875	Canola	cytosol	26.61	31.35
CDY44445	Canola	cytosol	32.49	31.02
CDY56757	Canola	plastid	31.09	29.52
Bra033610.1-P	Field mustard	plastid	30.81	29.26
Bra031212.1-P	Field mustard	cytosol	31.65	29.05
AT4G14905.2	Thale cress	plastid	30.25	29.03
CDY13795	Canola	cytosol	31.65	28.83
AT4G39240.1	Thale cress	cytosol, nucleus, peroxisome	29.97	28.53
CDY59764	Canola	cytosol	30.81	28.35
AT2G29860.1	Thale cress	cytosol	19.05	28.33
AT3G27910.1	Thale cress	extracellular, golgi	23.25	28.23
CDY13796	Canola	cytosol	29.97	28.01
Bra030283.1-P	Field mustard	cytosol	22.13	27.62
Bra030282.1-P	Field mustard	cytosol	24.93	27.55
AT2G29810.1	Thale cress	cytosol	29.41	27.42
AT2G29780.1	Thale cress	cytosol	30.53	27.39
TraesCS2D01G111900.1	Wheat	nucleus	34.73	27.25
AT2G29830.1	Thale cress	cytosol	29.13	27.15
AT2G29770.1	Thale cress	cytosol	29.41	27.13
CDX99573	Canola	cytosol	23.53	26.09
CDX99574	Canola	cytosol	24.65	25.88
Bra033606.1-P	Field mustard	cytosol	29.13	25.87
AT1G19470.1	Thale cress	cytosol	29.69	25.73
AT1G19460.1	Thale cress	cytosol	29.97	25.72
CDY15078	Canola	extracellular	20.17	25.44
AT2G29820.1	Thale cress	cytosol	26.61	24.48
AT2G21680.1	Thale cress	cytosol	29.41	24.48
AT2G29600.1	Thale cress	nucleus	27.73	23.86
CDY15873	Canola	cytosol	10.08	22.09
AT2G29800.1	Thale cress	cytosol	24.93	21.5
CDX72708	Canola	plastid	31.93	15.12

Protein Annotations

EnsemblPlants:Solyc04g051870.1.1	EnsemblPlantsGene:Solyc04g051870.1	Gene3D:2.120.10.80	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	InterPro:Kelch_1
PANTHER:PTHR24414	PANTHER:PTHR24414:SF23	PFAM:PF00646	PFAM:PF01344	SMART:SM00256	SMART:SM00612
SUPFAM:SSF117281	SUPFAM:SSF81383	UniParc:UPI000276736D	UniProt:K4BSE3	MapMan:35.1	:

Description

No Description!

Coordinates

chr4:-:51175178..51176251

Molecular Weight (calculated)

39758.3 Da

IEP (calculated)

8.032

GRAVY (calculated)

0.033

Length

357 amino acids

Sequence
(BLAST)

001: MADLSSQSQL IPNLPDDIAL QCLARVPRSH HPVLSLVSKS WRCILSSTAL YTTRSILRTT ETFLYLNIRV NSTFHWYTLF HNLTFTNPEK PRKLFPLSSI
101: PTKPIGPAYA VLGSRIYLIG GSIGDIPSNN VWVYDCRLNC WEMGPRMRIG REFAAAGVVN GKIYVMGGCV VDNWARSMNW AEVFDPMTGL WTALPSPIEV
201: RDKWMHASAV VGEKMYAMAD RGGVVYDVGG CEWGSVSKRL DLGWRGRAAV VGGLLYCYDY LGKIRGYDVK EDVWKELKGV DKGLPKFLCG ATMVNFDDRL
301: CVVWEGKGRG KEVDIMCAEI EVWKDKDGGL SGNILWSDMI LVVPNGASIV QCLAVDL

Best Arabidopsis Sequence Match ( AT2G21950.1 )
(BLAST)

001: MAATTSSGDE PPETKSPAQL IPLLSEDVAL SCLARVPRCH YPILSLVSKT FRSLPTSPLL YATRALVGAT ENILYVAIRI PPESGACWFT LLHRTLSNST
101: NSKMLVPIPS CPSPSLVGSA YVVVDSEIYV IGGSIRDVPS SSVWVLDCRF HTWRRVSNMR VGREFAAAGV IDGKIYVIGG CVVDNWARSI NWAEMFDIKT
201: QTWEPVASPG MEVREKWMHA SAVMEGKVYA MADRNGVVYE PKEKKWEMPE KRLDLGWRGR ACVIENILYC YDYLGKIRGY DPKERIWREL KGVESLPKFL
301: CGATMANRGG KLTVLWEGKA GSGGSRRMEI WCAEIDVGRR GEREIWGKIE WSGTVLTVPN ESAIVNCLAA TV

Arabidopsis Description

SKIP6F-box/kelch-repeat protein SKIP6 [Source:UniProtKB/Swiss-Prot;Acc:Q9SJ04]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.