CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY15873	Canola	cytosol	45.03	88.96
CDY15875	Canola	cytosol	54.35	57.76
CDX99574	Canola	cytosol	60.25	57.06
CDY15078	Canola	extracellular	38.82	44.17
AT2G29810.1	Thale cress	cytosol	50.0	42.04
CDY59764	Canola	cytosol	47.52	39.43
AT2G29830.1	Thale cress	cytosol	46.58	39.16
CDY13795	Canola	cytosol	45.96	37.76
CDY13796	Canola	cytosol	44.72	37.7
AT2G29770.1	Thale cress	cytosol	41.61	34.63
KRG89620	Soybean	cytosol	14.29	34.33
AT2G29820.1	Thale cress	cytosol	41.3	34.28
AT2G29780.1	Thale cress	cytosol	41.61	33.67
AT2G29860.1	Thale cress	cytosol	24.22	32.5
AT2G29800.1	Thale cress	cytosol	41.3	32.13
CDY69098	Canola	cytosol, plastid	36.96	31.9
CDY44445	Canola	cytosol	36.96	31.82
AT2G29600.1	Thale cress	nucleus	40.99	31.81
CDY46225	Canola	cytosol	33.85	29.54
CDY15853	Canola	cytosol	33.54	29.27
CDY56757	Canola	plastid	34.16	29.26
KRH64149	Soybean	cytosol	31.37	28.13
KRH53797	Soybean	cytosol	30.75	27.35
VIT_07s0031g01580.t01	Wine grape	plastid	29.81	26.59
PGSC0003DMT400042717	Potato	cytosol	26.4	23.81
GSMUA_Achr2P14860_001	Banana	cytosol, endoplasmic reticulum, plastid	27.33	23.59
Solyc04g051870.1.1	Tomato	extracellular	26.09	23.53
Zm00001d007152_P001	Maize	plastid	25.16	21.54
EER97716	Sorghum	plastid	24.84	21.16
TraesCS2B01G130200.1	Wheat	cytosol, endoplasmic reticulum, plastid	24.53	20.95
TraesCS2A01G111200.1	Wheat	cytosol, endoplasmic reticulum, plasma membrane	24.22	20.69
HORVU2Hr1G019280.1	Barley	cytosol	23.6	20.05
Os07t0673700-01	Rice	cytosol	23.29	19.79
TraesCS2D01G111900.1	Wheat	nucleus	21.12	14.95
CDX72708	Canola	plastid	33.54	14.32

Protein Annotations

EnsemblPlants:CDX99573	EnsemblPlantsGene:GSBRNA2T00108059001	Gene3D:2.120.10.80	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	InterPro:Kelch_1	PANTHER:PTHR24414	PANTHER:PTHR24414:SF23	PFAM:PF01344
ProteinID:CDX99573	ProteinID:CDX99573.1	SMART:SM00612	SUPFAM:SSF117281	UniParc:UPI0004EDECA5	MapMan:35.1

Description

BnaC04g33300D

Coordinates

chrLK031912:-:47024..47992

Molecular Weight (calculated)

35825.0 Da

IEP (calculated)

6.615

GRAVY (calculated)

-0.132

Length

322 amino acids

Sequence
(BLAST)

001: MAQIPGGGDA NKKPQEEPVL YASIGFPPSE SPSWYTLHRD NVSLTLRRIQ EPLPSRLLSA VATIGTEMYV LGGSVGGNAT SNVTLIDCRF RTSQPFPSMR
101: RARSRAVAGA IGGKIYVIGG CRKKSDDWVE VFDVKARSWR VVPGVLPHAH WEGQFVTCAV MDDKIFVLDP TTCLVFDPIV GALVEWDDGV EMRSLWQASS
201: CVVDDMLYTV DPGCSLKHPI VVYDPKAKER RWRPVCGVDL RRDLPPFDSW YDSKMANLGG KLVILVGSNP WPCFHHGTEE IWCVEIALER QGDDIWGHVE
301: STTLVLTSRK WPSIELSRTV TL

Best Arabidopsis Sequence Match ( AT2G29810.1 )
(BLAST)

001: MAVISETSDE GSNGGAANKK PQEEEENIPP IPKELPEELI VIIVALVRRY HYPKLSLISK AYRDLISSPE LFQTRSRLGF TEPVLYTSIG FPPFDLPSWY
101: ILHRISLQFK QITSLPSMLP GSAVVTIDYK MYVLGGFIGL NQPVSTMIVI DCRFHTYREL PSMQRDRGGA AAGVIDGKIY VIGGCKKRYN DWVEVFDVEN
201: ESWETVPGPY PNVASESVEF SQYAVMEQKI YILDPLFCLT YEPRKRRFEA WGRRSQQRRY ESCCVVNDML CTVDSTCSHG YPIVVYDPKG MVWRPVKGVQ
301: SSDLPNLVYY ESRMANFGGK LVILGGNQSR DRKDSYLEKD IWCIEIALEK REDGDIWGHV ESRSVVLSSS KWPLIALSRS VTV

Arabidopsis Description

Putative F-box/kelch-repeat protein At2g29810 [Source:UniProtKB/Swiss-Prot;Acc:O82375]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.