Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY15873 | Canola | cytosol | 34.71 | 72.39 |
| CDY15875 | Canola | cytosol | 62.35 | 69.97 |
| CDX99573 | Canola | cytosol | 57.06 | 60.25 |
| Bra030283.1-P | Field mustard | cytosol | 49.12 | 58.39 |
| AT2G29810.1 | Thale cress | cytosol | 47.65 | 42.3 |
| CDY13796 | Canola | cytosol | 45.88 | 40.84 |
| CDY59764 | Canola | cytosol | 45.29 | 39.69 |
| CDY13795 | Canola | cytosol | 45.59 | 39.54 |
| AT2G29770.1 | Thale cress | cytosol | 41.76 | 36.69 |
| AT2G29830.1 | Thale cress | cytosol | 40.29 | 35.77 |
| AT2G29780.1 | Thale cress | cytosol | 40.0 | 34.17 |
| CDY15078 | Canola | extracellular | 28.24 | 33.92 |
| AT2G29820.1 | Thale cress | cytosol | 37.06 | 32.47 |
| AT2G29800.1 | Thale cress | cytosol | 39.41 | 32.37 |
| AT2G29600.1 | Thale cress | nucleus | 38.53 | 31.57 |
| CDY69098 | Canola | cytosol, plastid | 33.24 | 30.29 |
| AT2G29860.1 | Thale cress | cytosol | 21.18 | 30.0 |
| CDY44445 | Canola | cytosol | 32.65 | 29.68 |
| CDY46225 | Canola | cytosol | 31.18 | 28.73 |
| KRH64149 | Soybean | cytosol | 30.0 | 28.41 |
| CDY56757 | Canola | plastid | 31.18 | 28.19 |
| CDY15853 | Canola | cytosol | 30.59 | 28.18 |
| KRH53797 | Soybean | cytosol | 27.94 | 26.24 |
| KRG89620 | Soybean | cytosol | 10.29 | 26.12 |
| VIT_07s0031g01580.t01 | Wine grape | plastid | 26.47 | 24.93 |
| PGSC0003DMT400042717 | Potato | cytosol | 26.18 | 24.93 |
| Solyc04g051870.1.1 | Tomato | extracellular | 25.88 | 24.65 |
| GSMUA_Achr2P14860_001 | Banana | cytosol, endoplasmic reticulum, plastid | 26.47 | 24.13 |
| Zm00001d007152_P001 | Maize | plastid | 24.71 | 22.34 |
| EER97716 | Sorghum | plastid | 24.71 | 22.22 |
| TraesCS2B01G130200.1 | Wheat | cytosol, endoplasmic reticulum, plastid | 24.41 | 22.02 |
| Os07t0673700-01 | Rice | cytosol | 24.12 | 21.64 |
| TraesCS2A01G111200.1 | Wheat | cytosol, endoplasmic reticulum, plasma membrane | 23.82 | 21.49 |
| HORVU2Hr1G019280.1 | Barley | cytosol | 19.12 | 17.15 |
| CDX72708 | Canola | plastid | 30.88 | 13.93 |
| TraesCS2D01G111900.1 | Wheat | nucleus | 16.76 | 12.53 |
Protein Annotations
| EnsemblPlants:CDX99574 | EnsemblPlantsGene:GSBRNA2T00108060001 | Gene3D:2.120.10.80 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:F-box-like_dom_sf | InterPro:F-box_dom | InterPro:IPR001810 | InterPro:IPR015915 | InterPro:Kelch-typ_b-propeller | InterPro:Kelch_1 |
| PANTHER:PTHR24414 | PANTHER:PTHR24414:SF23 | PFAM:PF00646 | PFAM:PF01344 | ProteinID:CDX99574 | ProteinID:CDX99574.1 |
| SEG:seg | SUPFAM:SSF117281 | SUPFAM:SSF81383 | UniParc:UPI0004EF3F68 | MapMan:35.1 | : |
Description
BnaC04g33310D
Coordinates
chrLK031912:-:51166..55933
Molecular Weight (calculated)
38142.9 Da
IEP (calculated)
9.152
GRAVY (calculated)
-0.270
Length
340 amino acids
Sequence
(BLAST)
(BLAST)
001: MPGGDRNKKP QEEEEEEVKT SFAHIPYDLT EHCLAITPRR HYPNLSLASK SFRRILRSPE LYQRRSTLGV TKPVLYASIG FPSSETPSWH TLHRDHVSFR
101: LRKIASLPSR LLSAVATVGT EMHVLGGSVG GNPTSDVNLI DCRFHTSRSL PSMKRTRSRA VAGAIDGKLG AICQLSCHIF VLDPSATCLV FDPSVGALVE
201: WDDGGELMSL WQASSCMVDD KPNKLYTIDT GRSLKYPIVV YDPKAKVKRW KPVYGVNLRR DLLPFSSYYD SKMANLGGKL LILIGNNPWP IFHYGRQDVW
301: CVEIALERHG DETFGRVEST MLVLTSQKWP SIELSRTLTI
101: LRKIASLPSR LLSAVATVGT EMHVLGGSVG GNPTSDVNLI DCRFHTSRSL PSMKRTRSRA VAGAIDGKLG AICQLSCHIF VLDPSATCLV FDPSVGALVE
201: WDDGGELMSL WQASSCMVDD KPNKLYTIDT GRSLKYPIVV YDPKAKVKRW KPVYGVNLRR DLLPFSSYYD SKMANLGGKL LILIGNNPWP IFHYGRQDVW
301: CVEIALERHG DETFGRVEST MLVLTSQKWP SIELSRTLTI
001: MAVISETSDE GSNGGAANKK PQEEEENIPP IPKELPEELI VIIVALVRRY HYPKLSLISK AYRDLISSPE LFQTRSRLGF TEPVLYTSIG FPPFDLPSWY
101: ILHRISLQFK QITSLPSMLP GSAVVTIDYK MYVLGGFIGL NQPVSTMIVI DCRFHTYREL PSMQRDRGGA AAGVIDGKIY VIGGCKKRYN DWVEVFDVEN
201: ESWETVPGPY PNVASESVEF SQYAVMEQKI YILDPLFCLT YEPRKRRFEA WGRRSQQRRY ESCCVVNDML CTVDSTCSHG YPIVVYDPKG MVWRPVKGVQ
301: SSDLPNLVYY ESRMANFGGK LVILGGNQSR DRKDSYLEKD IWCIEIALEK REDGDIWGHV ESRSVVLSSS KWPLIALSRS VTV
101: ILHRISLQFK QITSLPSMLP GSAVVTIDYK MYVLGGFIGL NQPVSTMIVI DCRFHTYREL PSMQRDRGGA AAGVIDGKIY VIGGCKKRYN DWVEVFDVEN
201: ESWETVPGPY PNVASESVEF SQYAVMEQKI YILDPLFCLT YEPRKRRFEA WGRRSQQRRY ESCCVVNDML CTVDSTCSHG YPIVVYDPKG MVWRPVKGVQ
301: SSDLPNLVYY ESRMANFGGK LVILGGNQSR DRKDSYLEKD IWCIEIALEK REDGDIWGHV ESRSVVLSSS KWPLIALSRS VTV
Arabidopsis Description
Putative F-box/kelch-repeat protein At2g29810 [Source:UniProtKB/Swiss-Prot;Acc:O82375]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.