CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 4
cytosol 2
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra025310.1-P	Field mustard	cytosol, plastid	100.0	100.0
CDY44445	Canola	cytosol	88.47	88.24
AT3G27910.1	Thale cress	extracellular, golgi	39.68	50.34
CDY56757	Canola	plastid	46.65	46.28
CDY46225	Canola	cytosol	38.34	38.75
CDY15853	Canola	cytosol	37.53	37.94
CDY13796	Canola	cytosol	38.61	37.7
CDY15873	Canola	cytosol	16.35	37.42
CDX99573	Canola	cytosol	31.9	36.96
CDY59764	Canola	cytosol	38.07	36.6
KRG89620	Soybean	cytosol	12.87	35.82
CDY13795	Canola	cytosol	36.73	34.95
CDY15875	Canola	cytosol	28.15	34.65
CDX99574	Canola	cytosol	30.29	33.24
Solyc04g051870.1.1	Tomato	extracellular	31.64	33.05
PGSC0003DMT400042717	Potato	cytosol	31.64	33.05
VIT_07s0031g01580.t01	Wine grape	plastid	31.64	32.69
KRH64149	Soybean	cytosol	31.37	32.59
CDY15078	Canola	extracellular	24.66	32.51
KRH53797	Soybean	cytosol	31.37	32.32
GSMUA_Achr2P14860_001	Banana	cytosol, endoplasmic reticulum, plastid	24.93	24.93
TraesCS2B01G130200.1	Wheat	cytosol, endoplasmic reticulum, plastid	23.06	22.81
Os07t0673700-01	Rice	cytosol	23.06	22.69
CDX72708	Canola	plastid	45.04	22.28
TraesCS2A01G111200.1	Wheat	cytosol, endoplasmic reticulum, plasma membrane	22.25	22.02
EER97716	Sorghum	plastid	22.25	21.96
Zm00001d007152_P001	Maize	plastid	21.98	21.81
HORVU2Hr1G019280.1	Barley	cytosol	18.5	18.21
TraesCS2D01G111900.1	Wheat	nucleus	18.5	15.16

Protein Annotations

Gene3D:2.120.10.80	MapMan:35.1	UniProt:A0A078JNH0	EnsemblPlants:CDY69098	ProteinID:CDY69098	ProteinID:CDY69098.1
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00083052001
InterPro:IPR001810	InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	InterPro:Kelch_1	PFAM:PF00646	PFAM:PF01344
PANTHER:PTHR24414	PANTHER:PTHR24414:SF23	SMART:SM00256	SMART:SM00612	SUPFAM:SSF117281	SUPFAM:SSF81383
UniParc:UPI000253FC2E	:	:	:	:	:

Description

BnaAnng29330DBnaAnng29330D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JNH0]

Coordinates

chrLK038646:+:690..1946

Molecular Weight (calculated)

42150.8 Da

IEP (calculated)

8.375

GRAVY (calculated)

-0.253

Length

373 amino acids

Sequence
(BLAST)

001: MFSPVSANAG NPPPKCNKPT VSSLPLPDDI SMICLAYVPR CDHPSLSEVC KTFNQIIASS ELNRVRSLHK RTENVLYLAL RFSRDQKPIW YTLNQKPSKE
101: ESNSLNHKLV PYPSFPCLPC WGSNVIVIGR EMYVFGGCID DELTTDAFAI DCITRTCRSL PSMRVARGCA AFGVVDEKIY VLGGCNKKKS SKDWLEVFDL
201: KNQTWESFPG VCNKNLHEIT LNSFVMNEKI YIMDRIRSFV YDPKKNKWAS ESSLNSGWVV GSCVIDNMLY TFGIEKGISV YDPKARTWRK LKGVDEDLPD
301: MRGIQGGSRM VNHGGKLVIL FKRNESGETR IWCTEIALER RGQGEHWGKV LWTNIVATFE NSPTIVQCVD VII

Best Arabidopsis Sequence Match ( AT4G39240.1 )
(BLAST)

001: MPFSAASSSS VSSIAEEPPP KKQHDPSPSC SSYLLLLPDE IILNCLARLP KCYYPVISLV SKTFRRLIAS PEIYVERSLL RRTERVLYVV LRSHATETPR
101: WYTLNFKPFG NDSNNHRLVP IPSFPSIPCW GMSIVAIDSE IYVLGGCIDN ELVSTGFVVE CPSHTCRLLP SMKQARGCAA VGFFDGKLYV IGGCNPLSVN
201: WVEAFDLKTQ TWESGLGVNN VEMHDLTIRS FAIDDKIYIM DRKNSFVYDP KEGTLETDEL LDTQWSVGSC VIDGKIYTFG SKNRIWVFDP IAMVWDRLKG
301: LDDLPDKRDG SRMSNLGGNL AIMFNLEKGS TKICCTEIRL ERREGGKIWG TVLWSNIVIT LKEPSTIVRC LTVTV

Arabidopsis Description

F-box/kelch-repeat protein At4g39240 [Source:UniProtKB/Swiss-Prot;Acc:Q9T031]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.