CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY59764	Canola	cytosol	76.7	75.52
CDY13795	Canola	cytosol	73.56	71.68
CDY15078	Canola	extracellular	38.48	51.94
CDY15873	Canola	cytosol	20.16	47.24
CDX99574	Canola	cytosol	40.84	45.88
CDX99573	Canola	cytosol	37.7	44.72
CDY15875	Canola	cytosol	32.46	40.92
AT1G19460.1	Thale cress	cytosol	44.24	40.62
AT1G19470.1	Thale cress	cytosol	43.72	40.53
CDY69098	Canola	cytosol, plastid	37.7	38.61
CDY44445	Canola	cytosol	37.7	38.5
CDY56757	Canola	plastid	34.82	35.37
KRG89620	Soybean	cytosol	12.3	35.07
CDY15853	Canola	cytosol	32.46	33.6
CDY46225	Canola	cytosol	31.94	33.06
VIT_07s0031g01580.t01	Wine grape	plastid	30.63	32.41
KRH53797	Soybean	cytosol	29.58	31.22
KRH64149	Soybean	cytosol	28.8	30.64
PGSC0003DMT400042717	Potato	cytosol	28.01	29.97
Solyc04g051870.1.1	Tomato	extracellular	28.01	29.97
TraesCS2A01G111200.1	Wheat	cytosol, endoplasmic reticulum, plasma membrane	26.18	26.53
TraesCS2B01G130200.1	Wheat	cytosol, endoplasmic reticulum, plastid	25.92	26.26
GSMUA_Achr2P14860_001	Banana	cytosol, endoplasmic reticulum, plastid	25.39	26.01
EER97716	Sorghum	plastid	24.08	24.34
Os07t0673700-01	Rice	cytosol	24.08	24.27
Zm00001d007152_P001	Maize	plastid	23.56	23.94
HORVU2Hr1G019280.1	Barley	cytosol	21.2	21.37
CDX72708	Canola	plastid	35.6	18.04
TraesCS2D01G111900.1	Wheat	nucleus	20.68	17.36

Protein Annotations

Gene3D:2.120.10.80	MapMan:35.1	UniProt:A0A078FKW8	EnsemblPlants:CDY13796	ProteinID:CDY13796	ProteinID:CDY13796.1
InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00078235001	InterPro:IPR001810
InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	InterPro:Kelch_1	PFAM:PF00646	PFAM:PF01344	PFscan:PS50181
PANTHER:PTHR24414	PANTHER:PTHR24414:SF23	SMART:SM00612	SUPFAM:SSF117281	UniParc:UPI0004EF06C7	SEG:seg

Description

BnaA09g42980DBnaA09g42980D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FKW8]

Coordinates

chrLK032038:-:425598..426746

Molecular Weight (calculated)

42723.7 Da

IEP (calculated)

7.664

GRAVY (calculated)

-0.010

Length

382 amino acids

Sequence
(BLAST)

001: MAVISDIPEG DNGGAPNKKP QEQPGEVNTA TSLESLPDVL IEHIVARVPR TNHPELSLVS KLFRRIIALP ELRLTRSHLA ISEHVLYALL AFPPHPPSWY
101: ILNASLRLRR VNTLPPMPSG SAVVTIGHEI YVIGGSNGSE YLTSVTVVDC RTHTCRSLPS MRSARYRAAA GVIDGKIYVM GGCVNRSGRF RVETFDLERQ
201: IWLGSQINSL WRDIVTYDVM KEKIYVLGRQ QCLGVYNPKE GTLQSYLGRC NLGGLWQASS CVVDDLLYTI DPGCSVWTPI IVFDPELNAW KPVKGVYGLP
301: PCLYWYAYES KMANVGGKLV ILVGNQSQLF NYYGEKYIWC VEIALERRRG YEIWGKVETV EVVFETTEST APIIELCRSV IV

Best Arabidopsis Sequence Match ( AT2G29810.1 )
(BLAST)

001: MAVISETSDE GSNGGAANKK PQEEEENIPP IPKELPEELI VIIVALVRRY HYPKLSLISK AYRDLISSPE LFQTRSRLGF TEPVLYTSIG FPPFDLPSWY
101: ILHRISLQFK QITSLPSMLP GSAVVTIDYK MYVLGGFIGL NQPVSTMIVI DCRFHTYREL PSMQRDRGGA AAGVIDGKIY VIGGCKKRYN DWVEVFDVEN
201: ESWETVPGPY PNVASESVEF SQYAVMEQKI YILDPLFCLT YEPRKRRFEA WGRRSQQRRY ESCCVVNDML CTVDSTCSHG YPIVVYDPKG MVWRPVKGVQ
301: SSDLPNLVYY ESRMANFGGK LVILGGNQSR DRKDSYLEKD IWCIEIALEK REDGDIWGHV ESRSVVLSSS KWPLIALSRS VTV

Arabidopsis Description

Putative F-box/kelch-repeat protein At2g29810 [Source:UniProtKB/Swiss-Prot;Acc:O82375]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.