CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX68112
CDX73212
CDX80590
CDX85931
CDX87650
CDY13521
CDY39073

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G21950.1	CDX68112	AT1G75950.1	12795696
AT2G21950.1	CDX73212	AT1G75950.1	12795696
AT2G21950.1	CDX80590	AT1G75950.1	12795696
AT2G21950.1	CDX85931	AT1G75950.1	12795696
AT2G21950.1	CDX87650	AT1G75950.1	12795696
AT2G21950.1	CDY13521	AT1G75950.1	12795696
AT2G21950.1	CDY39073	AT1G75950.1	12795696

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra030269.1-P	Field mustard	cytosol	98.64	98.64
CDY46225	Canola	cytosol	88.62	88.62
AT2G21950.1	Thale cress	cytosol	81.03	80.38
VIT_07s0031g01580.t01	Wine grape	plastid	54.47	55.68
KRH53797	Soybean	cytosol	54.2	55.25
KRG89620	Soybean	cytosol	20.05	55.22
Solyc04g051870.1.1	Tomato	extracellular	53.39	55.18
PGSC0003DMT400042717	Potato	cytosol	53.39	55.18
KRH64149	Soybean	cytosol	52.57	54.04
GSMUA_Achr2P14860_001	Banana	cytosol, endoplasmic reticulum, plastid	43.63	43.16
CDY56757	Canola	plastid	40.38	39.63
EER97716	Sorghum	plastid	40.11	39.15
Zm00001d007152_P001	Maize	plastid	39.02	38.3
TraesCS2A01G111200.1	Wheat	cytosol, endoplasmic reticulum, plasma membrane	39.02	38.2
TraesCS2B01G130200.1	Wheat	cytosol, endoplasmic reticulum, plastid	39.02	38.2
CDY44445	Canola	cytosol	38.48	37.97
Os07t0673700-01	Rice	cytosol	38.75	37.73
CDY69098	Canola	cytosol, plastid	37.94	37.53
CDY15875	Canola	cytosol	28.18	34.32
CDY59764	Canola	cytosol	35.5	33.76
CDY13795	Canola	cytosol	35.77	33.67
CDX99573	Canola	cytosol	29.27	33.54
HORVU2Hr1G019280.1	Barley	cytosol	33.88	32.98
CDY13796	Canola	cytosol	33.6	32.46
CDX99574	Canola	cytosol	28.18	30.59
CDY15078	Canola	extracellular	23.04	30.04
CDY15873	Canola	cytosol	12.2	27.61
TraesCS2D01G111900.1	Wheat	nucleus	32.52	26.37
CDX72708	Canola	plastid	41.19	20.16

Protein Annotations

Gene3D:2.120.10.80	MapMan:35.1	UniProt:A0A078FU13	EnsemblPlants:CDY15853	ProteinID:CDY15853	ProteinID:CDY15853.1
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00090201001
InterPro:IPR001810	InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	InterPro:Kelch_1	PFAM:PF00646	PFAM:PF01344
PANTHER:PTHR24414	PANTHER:PTHR24414:SF23	SMART:SM00612	SUPFAM:SSF117281	SUPFAM:SSF81383	UniParc:UPI0004EF0E2C
SEG:seg	:	:	:	:	:

Description

BnaA04g12580DBnaA04g12580D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FU13]

Coordinates

chrLK032059:+:116807..118238

Molecular Weight (calculated)

40749.0 Da

IEP (calculated)

8.396

GRAVY (calculated)

-0.107

Length

369 amino acids

Sequence
(BLAST)

001: MAATTSSSDD PPEPKTPTQL IPSLPDDVAL NCLARVSRCD HPNLSLVSKS FRSLPKSPLL YSIRSLANAT ENILYVAIRV PPETGARWFT LLRRAATNSH
101: LLVPIPSCPF PSLVGSAYAV VGSEIYVIGG SVKDVPSSSV WVLDCKFHTW RRVNNMRVGR EFAAAGVIEG KIYVIGGCVV DNWARSSNWA ERFDVKAQTW
201: EAVASPGVEV REKWMHASAV MEGRVYAMAD RNGVVYEPNK GEWGVPEKRL DLGWRGRACV IEDVLFCYDY LGKIRGYDPK ERVWREVRGV ESLPKFLCGA
301: TMANRGGKLA VLWEGKAGSG GARRMEIWCA EIEVERRGEG EIWGKILWSD TVFTVPDKSA IVNCLAATV

Best Arabidopsis Sequence Match ( AT2G21950.1 )
(BLAST)

001: MAATTSSGDE PPETKSPAQL IPLLSEDVAL SCLARVPRCH YPILSLVSKT FRSLPTSPLL YATRALVGAT ENILYVAIRI PPESGACWFT LLHRTLSNST
101: NSKMLVPIPS CPSPSLVGSA YVVVDSEIYV IGGSIRDVPS SSVWVLDCRF HTWRRVSNMR VGREFAAAGV IDGKIYVIGG CVVDNWARSI NWAEMFDIKT
201: QTWEPVASPG MEVREKWMHA SAVMEGKVYA MADRNGVVYE PKEKKWEMPE KRLDLGWRGR ACVIENILYC YDYLGKIRGY DPKERIWREL KGVESLPKFL
301: CGATMANRGG KLTVLWEGKA GSGGSRRMEI WCAEIDVGRR GEREIWGKIE WSGTVLTVPN ESAIVNCLAA TV

Arabidopsis Description

SKIP6F-box/kelch-repeat protein SKIP6 [Source:UniProtKB/Swiss-Prot;Acc:Q9SJ04]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.