CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid
BaCelLo:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY69098	Canola	cytosol, plastid	88.24	88.47
AT3G27910.1	Thale cress	extracellular, golgi	40.11	51.02
CDY56757	Canola	plastid	47.06	46.81
CDY15853	Canola	cytosol	37.97	38.48
CDY46225	Canola	cytosol	37.97	38.48
CDY13796	Canola	cytosol	38.5	37.7
CDY59764	Canola	cytosol	39.04	37.63
CDX99573	Canola	cytosol	31.82	36.96
CDY15873	Canola	cytosol	15.78	36.2
KRG89620	Soybean	cytosol	12.83	35.82
CDY13795	Canola	cytosol	37.17	35.46
CDY15875	Canola	cytosol	27.81	34.32
KRH53797	Soybean	cytosol	31.82	32.87
KRH64149	Soybean	cytosol	31.55	32.87
PGSC0003DMT400042717	Potato	cytosol	31.28	32.77
CDX99574	Canola	cytosol	29.68	32.65
Solyc04g051870.1.1	Tomato	extracellular	31.02	32.49
VIT_07s0031g01580.t01	Wine grape	plastid	31.28	32.41
CDY15078	Canola	extracellular	23.8	31.45
GSMUA_Achr2P14860_001	Banana	cytosol, endoplasmic reticulum, plastid	24.87	24.93
CDX72708	Canola	plastid	45.72	22.68
Zm00001d007152_P001	Maize	plastid	22.19	22.07
TraesCS2B01G130200.1	Wheat	cytosol, endoplasmic reticulum, plastid	22.19	22.02
EER97716	Sorghum	plastid	22.19	21.96
Os07t0673700-01	Rice	cytosol	21.93	21.64
TraesCS2A01G111200.1	Wheat	cytosol, endoplasmic reticulum, plasma membrane	21.66	21.49
HORVU2Hr1G019280.1	Barley	cytosol	18.18	17.94
TraesCS2D01G111900.1	Wheat	nucleus	18.72	15.38

Protein Annotations

Gene3D:2.120.10.80	MapMan:35.1	UniProt:A0A078I0P5	EnsemblPlants:CDY44445	ProteinID:CDY44445	ProteinID:CDY44445.1
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00080145001
InterPro:IPR001810	InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	InterPro:Kelch_1	PFAM:PF00646	PFAM:PF01344
PANTHER:PTHR24414	PANTHER:PTHR24414:SF23	SMART:SM00256	SMART:SM00612	SUPFAM:SSF117281	SUPFAM:SSF81383
UniParc:UPI0004EC7369	:	:	:	:	:

Description

BnaC07g24830DBnaC07g24830D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I0P5]

Coordinates

chrLK032589:-:114962..116218

Molecular Weight (calculated)

42288.0 Da

IEP (calculated)

8.566

GRAVY (calculated)

-0.263

Length

374 amino acids

Sequence
(BLAST)

001: MYFPASANAG NTPPKCNKPT LSSLPLPDDI SVICLAYVPR CDHPSLSEVC KTFNQIIAAS SELNRVRSLH KSTENVLYLA LRFSRDQKPI WYTLNQKPSK
101: EESNSLNHKL VPYPSFPCLP CWGSNVIVIG QEMYVLGGCI DGELTTNAFA IDCITRTCRS LPSMRVARGC AAFGVVDEKI YVLGGCNKKK SSKDWLEVFD
201: LKNQTWESFP GVCNKNLHEI TLNSFVMNEK IYIMDRERSF VYDPKKNKWE RQSSLNSEWV VGSCVIDYML YTFGFEKGIS VYDPKARTWR ILKGVGEDLP
301: DMRGIQGGSR MANHGGKLVI LFKRNERGET KIWCTEIALE RRGQGEHWGK VLWSNIVASF KNSPTIVQCL DVII

Best Arabidopsis Sequence Match ( AT4G39240.1 )
(BLAST)

001: MPFSAASSSS VSSIAEEPPP KKQHDPSPSC SSYLLLLPDE IILNCLARLP KCYYPVISLV SKTFRRLIAS PEIYVERSLL RRTERVLYVV LRSHATETPR
101: WYTLNFKPFG NDSNNHRLVP IPSFPSIPCW GMSIVAIDSE IYVLGGCIDN ELVSTGFVVE CPSHTCRLLP SMKQARGCAA VGFFDGKLYV IGGCNPLSVN
201: WVEAFDLKTQ TWESGLGVNN VEMHDLTIRS FAIDDKIYIM DRKNSFVYDP KEGTLETDEL LDTQWSVGSC VIDGKIYTFG SKNRIWVFDP IAMVWDRLKG
301: LDDLPDKRDG SRMSNLGGNL AIMFNLEKGS TKICCTEIRL ERREGGKIWG TVLWSNIVIT LKEPSTIVRC LTVTV

Arabidopsis Description

F-box/kelch-repeat protein At4g39240 [Source:UniProtKB/Swiss-Prot;Acc:Q9T031]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.