Factsheet for PGSC0003DMT400042717

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 3
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g051870.1.1	Tomato	extracellular	97.76	97.76
VIT_07s0031g01580.t01	Wine grape	plastid	63.31	62.6
KRG89620	Soybean	cytosol	22.41	59.7
KRH53797	Soybean	cytosol	56.3	55.52
KRH64149	Soybean	cytosol	55.46	55.15
CDY46225	Canola	cytosol	56.58	54.74
CDY15853	Canola	cytosol	55.18	53.39
Bra030269.1-P	Field mustard	cytosol	55.18	53.39
AT2G21950.1	Thale cress	cytosol	54.62	52.42
GSMUA_Achr2P14860_001	Banana	cytosol, endoplasmic reticulum, plastid	47.9	45.84
TraesCS2B01G130200.1	Wheat	cytosol, endoplasmic reticulum, plastid	41.18	38.99
TraesCS2A01G111200.1	Wheat	cytosol, endoplasmic reticulum, plasma membrane	40.62	38.46
Os07t0673700-01	Rice	cytosol	40.06	37.73
EER97716	Sorghum	plastid	38.66	36.51
Zm00001d007152_P001	Maize	plastid	38.1	36.17
HORVU2Hr1G019280.1	Barley	cytosol	34.17	32.19
CDY15875	Canola	cytosol	26.89	31.68
Bra025310.1-P	Field mustard	cytosol, plastid	33.05	31.64
CDY69098	Canola	cytosol, plastid	33.05	31.64
CDY44445	Canola	cytosol	32.77	31.28
AT4G14905.2	Thale cress	plastid	31.09	29.84
CDY56757	Canola	plastid	31.37	29.79
Bra033610.1-P	Field mustard	plastid	31.09	29.52
Bra031212.1-P	Field mustard	cytosol	31.65	29.05
CDY13795	Canola	cytosol	31.65	28.83
AT4G39240.1	Thale cress	cytosol, nucleus, peroxisome	30.25	28.8
AT2G29860.1	Thale cress	cytosol	19.33	28.75
AT3G27910.1	Thale cress	extracellular, golgi	23.53	28.57
CDY59764	Canola	cytosol	30.81	28.35
CDY13796	Canola	cytosol	29.97	28.01
Bra030283.1-P	Field mustard	cytosol	22.41	27.97
AT2G29810.1	Thale cress	cytosol	29.97	27.94
Bra030282.1-P	Field mustard	cytosol	25.21	27.86
AT2G29780.1	Thale cress	cytosol	30.81	27.64
TraesCS2D01G111900.1	Wheat	nucleus	34.73	27.25
AT2G29830.1	Thale cress	cytosol	29.13	27.15
AT2G29770.1	Thale cress	cytosol	29.41	27.13
CDX99573	Canola	cytosol	23.81	26.4
AT1G19470.1	Thale cress	cytosol	30.25	26.21
AT1G19460.1	Thale cress	cytosol	30.53	26.2
CDX99574	Canola	cytosol	24.93	26.18
Bra033606.1-P	Field mustard	cytosol	29.13	25.87
CDY15078	Canola	extracellular	20.17	25.44
AT2G21680.1	Thale cress	cytosol	29.97	24.94
AT2G29820.1	Thale cress	cytosol	26.61	24.48
AT2G29600.1	Thale cress	nucleus	28.01	24.1
CDY15873	Canola	cytosol	10.08	22.09
AT2G29800.1	Thale cress	cytosol	25.21	21.74
CDX72708	Canola	plastid	32.77	15.52

Protein Annotations

EntrezGene:102589740	Gene3D:2.120.10.80	MapMan:35.1	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR001810	InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	InterPro:Kelch_1
UniProt:M1BDJ8	PFAM:PF00646	PFAM:PF01344	EnsemblPlantsGene:PGSC0003DMG400016578	PGSC:PGSC0003DMG400016578	EnsemblPlants:PGSC0003DMT400042717
PANTHER:PTHR24414	PANTHER:PTHR24414:SF23	SMART:SM00256	SMART:SM00612	SUPFAM:SSF117281	SUPFAM:SSF81383
UniParc:UPI00029543D2	RefSeq:XP_006362783.1	RefSeq:XP_015158655.1	SEG:seg	:	:

Description

Protein AFR [Source:PGSC_GENE;Acc:PGSC0003DMG400016578]

Coordinates

chr4:+:54383109..54386555

Molecular Weight (calculated)

39753.4 Da

IEP (calculated)

7.603

GRAVY (calculated)

0.073

Length

357 amino acids

Sequence
(BLAST)

001: MADLSLQSQL IPNLPDDIAL QCLARVPRSH HPILSLVSKS WRCILSSTAL YTTRSILRTT ETFLYLNIRV NSTFHWYTLF HNLTFTNPEK PRKLFPLSSI
101: PTKPIGPAFA VLGSRIYVIG GSIGEIPSNN VWVFDCRLNC WEMGPRMRIG REFAAAGVVN GKIYVMGGCV VDNWARSMNW AEVFDPMTGL WTALPSPIEV
201: RDKWMHASAV VGEKMYAMAD RGGVVYDVGG CEWGSVSKRL DLGWRGRAAV VGGVLYCYDY LGKIRGYDVK EDVWKELKGV DKGLPKFLCG ATMVNFDDRL
301: CVVWEGKGRG KEVDIMCAEI EVWKDEDGGL SGNILWSDMI LVVPNGASIV QCLAVDL

Best Arabidopsis Sequence Match ( AT2G21950.1 )
(BLAST)

001: MAATTSSGDE PPETKSPAQL IPLLSEDVAL SCLARVPRCH YPILSLVSKT FRSLPTSPLL YATRALVGAT ENILYVAIRI PPESGACWFT LLHRTLSNST
101: NSKMLVPIPS CPSPSLVGSA YVVVDSEIYV IGGSIRDVPS SSVWVLDCRF HTWRRVSNMR VGREFAAAGV IDGKIYVIGG CVVDNWARSI NWAEMFDIKT
201: QTWEPVASPG MEVREKWMHA SAVMEGKVYA MADRNGVVYE PKEKKWEMPE KRLDLGWRGR ACVIENILYC YDYLGKIRGY DPKERIWREL KGVESLPKFL
301: CGATMANRGG KLTVLWEGKA GSGGSRRMEI WCAEIDVGRR GEREIWGKIE WSGTVLTVPN ESAIVNCLAA TV

Arabidopsis Description

SKIP6F-box/kelch-repeat protein SKIP6 [Source:UniProtKB/Swiss-Prot;Acc:Q9SJ04]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.