Factsheet for Bra033610.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra003735.1-P
Bra008231.1-P
Bra015801.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G39240.1	Bra003735.1-P	AT1G75950.1	21798944
AT4G39240.1	Bra008231.1-P	AT1G75950.1	21798944
AT4G39240.1	Bra015801.1-P	AT1G75950.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY56757	Canola	plastid	95.21	95.21
AT4G39240.1	Thale cress	cytosol, nucleus, peroxisome	59.31	59.47
Bra033606.1-P	Field mustard	cytosol	61.97	57.96
AT4G14905.2	Thale cress	plastid	48.4	48.92
Bra025310.1-P	Field mustard	cytosol, plastid	45.21	45.58
Bra030269.1-P	Field mustard	cytosol	39.1	39.84
Bra031212.1-P	Field mustard	cytosol	36.17	34.96
Bra030282.1-P	Field mustard	cytosol	29.26	34.06
Bra030283.1-P	Field mustard	cytosol	24.73	32.52
KRG89620	Soybean	cytosol	11.44	32.09
PGSC0003DMT400042717	Potato	cytosol	29.52	31.09
KRH53797	Soybean	cytosol	29.79	30.94
KRH64149	Soybean	cytosol	29.52	30.92
Solyc04g051870.1.1	Tomato	extracellular	29.26	30.81
VIT_07s0031g01580.t01	Wine grape	plastid	28.99	30.19
GSMUA_Achr2P14860_001	Banana	cytosol, endoplasmic reticulum, plastid	25.53	25.74
EER97716	Sorghum	plastid	24.73	24.6
Zm00001d007152_P001	Maize	plastid	24.2	24.2
TraesCS2A01G111200.1	Wheat	cytosol, endoplasmic reticulum, plasma membrane	23.67	23.61
TraesCS2B01G130200.1	Wheat	cytosol, endoplasmic reticulum, plastid	23.14	23.08
Os07t0673700-01	Rice	cytosol	22.87	22.69
HORVU2Hr1G019280.1	Barley	cytosol	19.41	19.26
TraesCS2D01G111900.1	Wheat	nucleus	19.95	16.48

Protein Annotations

Gene3D:2.120.10.80	MapMan:35.1	EnsemblPlantsGene:Bra033610	EnsemblPlants:Bra033610.1	EnsemblPlants:Bra033610.1-P	InterPro:F-box-like_dom_sf
InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001810	InterPro:IPR015915
InterPro:Kelch-typ_b-propeller	InterPro:Kelch_1	UniProt:M4EXS1	PFAM:PF00646	PFAM:PF01344	PANTHER:PTHR24414
PANTHER:PTHR24414:SF23	SMART:SM00612	SUPFAM:SSF117281	SUPFAM:SSF81383	UniParc:UPI000253F88C	SEG:seg

Description

AT4G39240 (E=2e-127) | kelch repeat-containing F-box family protein

Coordinates

chrA06:+:26026242..26027372

Molecular Weight (calculated)

42362.3 Da

IEP (calculated)

9.143

GRAVY (calculated)

-0.120

Length

376 amino acids

Sequence
(BLAST)

001: MHLLTVTSSS GSNAEKPPQK KKKVHGPRPL SLLLLPDELS LNCLARVPRC YHPSVSMVST TMRRLIASPK IYVERSFLRR TENVLYVAIR SCVTETPRWY
101: TLNLKPFGQQ ESGVVNHSLV PVPSFPAVPP WGMSIVTVGS EIYVIGGSVN DKMVSTVFVI DCPSYTRRFL PSMKQARACS AAGIVGGKLY VIGGCNPRSS
201: NWVEAFDLKT QTWETVTVVH NLEVYEKMIR SFVMDGKICI MDRKSSFAYD PKEGRLERDP LLNGQWSVGS CVIDDKLYAF GRRNTIMEFD PVARFWSQVS
301: GLEDLPDKTE GSKMVNYGGK LVILVNLQRR STEIWYTEIE LERREGGEVW GTVLWSNRVL AFEDSYVILR SLAVSF

Best Arabidopsis Sequence Match ( AT4G39240.1 )
(BLAST)

001: MPFSAASSSS VSSIAEEPPP KKQHDPSPSC SSYLLLLPDE IILNCLARLP KCYYPVISLV SKTFRRLIAS PEIYVERSLL RRTERVLYVV LRSHATETPR
101: WYTLNFKPFG NDSNNHRLVP IPSFPSIPCW GMSIVAIDSE IYVLGGCIDN ELVSTGFVVE CPSHTCRLLP SMKQARGCAA VGFFDGKLYV IGGCNPLSVN
201: WVEAFDLKTQ TWESGLGVNN VEMHDLTIRS FAIDDKIYIM DRKNSFVYDP KEGTLETDEL LDTQWSVGSC VIDGKIYTFG SKNRIWVFDP IAMVWDRLKG
301: LDDLPDKRDG SRMSNLGGNL AIMFNLEKGS TKICCTEIRL ERREGGKIWG TVLWSNIVIT LKEPSTIVRC LTVTV

Arabidopsis Description

F-box/kelch-repeat protein At4g39240 [Source:UniProtKB/Swiss-Prot;Acc:Q9T031]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.