Factsheet for Bra030269.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 3
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra003735.1-P
Bra008231.1-P
Bra015801.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G21950.1	Bra003735.1-P	AT1G75950.1	12795696
AT2G21950.1	Bra008231.1-P	AT1G75950.1	12795696
AT2G21950.1	Bra015801.1-P	AT1G75950.1	12795696

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY15853	Canola	cytosol	98.64	98.64
AT2G21950.1	Thale cress	cytosol	81.3	80.65
VIT_07s0031g01580.t01	Wine grape	plastid	54.2	55.4
KRG89620	Soybean	cytosol	20.05	55.22
Solyc04g051870.1.1	Tomato	extracellular	53.39	55.18
PGSC0003DMT400042717	Potato	cytosol	53.39	55.18
KRH53797	Soybean	cytosol	53.93	54.97
KRH64149	Soybean	cytosol	52.3	53.76
GSMUA_Achr2P14860_001	Banana	cytosol, endoplasmic reticulum, plastid	43.9	43.43
EER97716	Sorghum	plastid	40.38	39.42
Bra033610.1-P	Field mustard	plastid	39.84	39.1
Zm00001d007152_P001	Maize	plastid	39.3	38.56
TraesCS2A01G111200.1	Wheat	cytosol, endoplasmic reticulum, plasma membrane	39.3	38.46
TraesCS2B01G130200.1	Wheat	cytosol, endoplasmic reticulum, plastid	39.3	38.46
Os07t0673700-01	Rice	cytosol	39.02	37.99
Bra025310.1-P	Field mustard	cytosol, plastid	37.67	37.27
Bra031212.1-P	Field mustard	cytosol	36.31	34.45
Bra033606.1-P	Field mustard	cytosol	36.31	33.33
HORVU2Hr1G019280.1	Barley	cytosol	34.15	33.25
Bra030283.1-P	Field mustard	cytosol	25.2	32.52
Bra030282.1-P	Field mustard	cytosol	27.91	31.89
TraesCS2D01G111900.1	Wheat	nucleus	32.79	26.59

Protein Annotations

Gene3D:2.120.10.80	MapMan:35.1	EnsemblPlantsGene:Bra030269	EnsemblPlants:Bra030269.1	EnsemblPlants:Bra030269.1-P	InterPro:F-box-like_dom_sf
InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001810	InterPro:IPR015915
InterPro:Kelch-typ_b-propeller	InterPro:Kelch_1	UniProt:M4EN99	PFAM:PF00646	PFAM:PF01344	PANTHER:PTHR24414
PANTHER:PTHR24414:SF23	SMART:SM00612	SUPFAM:SSF117281	SUPFAM:SSF81383	UniParc:UPI0002544011	SEG:seg

Description

AT2G21950 (E=6e-178) SKIP6 | SKIP6 (SKP1 interacting partner 6); ubiquitin-protein ligase

Coordinates

chrA04:-:9470575..9471684

Molecular Weight (calculated)

40658.8 Da

IEP (calculated)

7.878

GRAVY (calculated)

-0.079

Length

369 amino acids

Sequence
(BLAST)

001: MAATTSSSDD PPEPKTPTQL IPSLPDDVAL NCLARVSRCD HPNLSLVSKS FRSLPKSPLL YSIRSLANAT ENILYVAIRV PPETGARWFT LLRRAATNSH
101: LLVPIPSCPF PSLVGSAYAV VGSEIYVIGG SVKDVPSSSV WVLDCKIHTW RRVNNMRVGR EFAAAGVIDG KIYVIGGCVV DNWARSSNWA EMFDVKAQTW
201: EAVASPGVEV REKWMHASAV LEGRVYAMAD RNGVVYEPNE GEWGVPEKRL DLGWRGRACV IEDVLFCYDY LGKIRGYDPK ERVWREVRGV ESLPKFLCGA
301: TMANRGGKLA VLWEGKAGSG GARRMEIWCA EIEVERRGEG EIWGKILWSD TVFTVPDKSA IVNCLAATV

Best Arabidopsis Sequence Match ( AT2G21950.1 )
(BLAST)

001: MAATTSSGDE PPETKSPAQL IPLLSEDVAL SCLARVPRCH YPILSLVSKT FRSLPTSPLL YATRALVGAT ENILYVAIRI PPESGACWFT LLHRTLSNST
101: NSKMLVPIPS CPSPSLVGSA YVVVDSEIYV IGGSIRDVPS SSVWVLDCRF HTWRRVSNMR VGREFAAAGV IDGKIYVIGG CVVDNWARSI NWAEMFDIKT
201: QTWEPVASPG MEVREKWMHA SAVMEGKVYA MADRNGVVYE PKEKKWEMPE KRLDLGWRGR ACVIENILYC YDYLGKIRGY DPKERIWREL KGVESLPKFL
301: CGATMANRGG KLTVLWEGKA GSGGSRRMEI WCAEIDVGRR GEREIWGKIE WSGTVLTVPN ESAIVNCLAA TV

Arabidopsis Description

SKIP6F-box/kelch-repeat protein SKIP6 [Source:UniProtKB/Swiss-Prot;Acc:Q9SJ04]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.