Factsheet for Bra033606.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, peroxisome
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra003735.1-P
Bra008231.1-P
Bra015801.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G39240.1	Bra003735.1-P	AT1G75950.1	21798944
AT4G39240.1	Bra008231.1-P	AT1G75950.1	21798944
AT4G39240.1	Bra015801.1-P	AT1G75950.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra033610.1-P	Field mustard	plastid	57.96	61.97
AT4G39240.1	Thale cress	cytosol, nucleus, peroxisome	49.25	52.8
AT4G14905.2	Thale cress	plastid	40.55	43.82
Bra025310.1-P	Field mustard	cytosol, plastid	38.06	41.02
Bra030269.1-P	Field mustard	cytosol	33.33	36.31
Bra031212.1-P	Field mustard	cytosol	31.59	32.65
KRH64149	Soybean	cytosol	28.36	31.75
Bra030283.1-P	Field mustard	cytosol	22.39	31.47
KRG89620	Soybean	cytosol	10.45	31.34
KRH53797	Soybean	cytosol	27.86	30.94
Bra030282.1-P	Field mustard	cytosol	24.38	30.34
VIT_07s0031g01580.t01	Wine grape	plastid	26.62	29.64
PGSC0003DMT400042717	Potato	cytosol	25.87	29.13
Solyc04g051870.1.1	Tomato	extracellular	25.87	29.13
GSMUA_Achr2P14860_001	Banana	cytosol, endoplasmic reticulum, plastid	22.89	24.66
EER97716	Sorghum	plastid	22.39	23.81
Zm00001d007152_P001	Maize	plastid	21.89	23.4
TraesCS2A01G111200.1	Wheat	cytosol, endoplasmic reticulum, plasma membrane	21.39	22.81
TraesCS2B01G130200.1	Wheat	cytosol, endoplasmic reticulum, plastid	21.39	22.81
Os07t0673700-01	Rice	cytosol	20.9	22.16
HORVU2Hr1G019280.1	Barley	cytosol	16.67	17.68
TraesCS2D01G111900.1	Wheat	nucleus	18.16	16.04

Protein Annotations

Gene3D:2.120.10.80	MapMan:35.1	EnsemblPlantsGene:Bra033606	EnsemblPlants:Bra033606.1	EnsemblPlants:Bra033606.1-P	InterPro:F-box_dom
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001810	InterPro:IPR015915	InterPro:Kelch-typ_b-propeller
InterPro:Kelch_1	UniProt:M4EXR9	PFAM:PF00646	PFAM:PF01344	PANTHER:PTHR24414	PANTHER:PTHR24414:SF23
SUPFAM:SSF117281	UniParc:UPI000253F88D	SEG:seg	:	:	:

Description

AT4G39240 (E=9e-057) | kelch repeat-containing F-box family protein

Coordinates

chrA06:+:26032740..26034203

Molecular Weight (calculated)

45845.7 Da

IEP (calculated)

8.232

GRAVY (calculated)

-0.101

Length

402 amino acids

Sequence
(BLAST)

001: MQLSTLTSSS ESPKKLHHDD APSLLLLLPE EISLNCLARV PRCYYPWVSL VSTTLRRLIA SPEIYTKRSA LHRTEDVLCV ALRPYGRRTL QWYTLNLIKP
101: TFGQQESEVA VKHRLVPVPV PSFPLVPYWG MSIVTVGSEI YFLGGSVDDS FVSTAFVIDC PSYTCRSLPN MKQERGGAAV GIVGGKLYVM GGCDPQGISI
201: LIPFFPLKWR KNRVLHWRCS RSPNWVEAFD LKTQTWETVR RLDDVEVYEK TIRSFVMDGK ICIMDRKSSF AYDPKEGSLE RDLLLNKQWT VGSCVVDDKL
301: YSFDWQKALW EFDPVSRVWS RVKGLEDVPG DRDVTKMANC GGKIAILCNV EKCSTEIWYT EIGLERREGG EVWGTILWSG LVLFLRKLEN VLEQLCLIKM
401: KI

Best Arabidopsis Sequence Match ( AT4G39240.1 )
(BLAST)

001: MPFSAASSSS VSSIAEEPPP KKQHDPSPSC SSYLLLLPDE IILNCLARLP KCYYPVISLV SKTFRRLIAS PEIYVERSLL RRTERVLYVV LRSHATETPR
101: WYTLNFKPFG NDSNNHRLVP IPSFPSIPCW GMSIVAIDSE IYVLGGCIDN ELVSTGFVVE CPSHTCRLLP SMKQARGCAA VGFFDGKLYV IGGCNPLSVN
201: WVEAFDLKTQ TWESGLGVNN VEMHDLTIRS FAIDDKIYIM DRKNSFVYDP KEGTLETDEL LDTQWSVGSC VIDGKIYTFG SKNRIWVFDP IAMVWDRLKG
301: LDDLPDKRDG SRMSNLGGNL AIMFNLEKGS TKICCTEIRL ERREGGKIWG TVLWSNIVIT LKEPSTIVRC LTVTV

Arabidopsis Description

F-box/kelch-repeat protein At4g39240 [Source:UniProtKB/Swiss-Prot;Acc:Q9T031]
SUBAcon: [cytosol,nucleus,peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.