Factsheet for Bra025310.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, plastid

Predictor Summary:

plastid 4
cytosol 2
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY69098	Canola	cytosol, plastid	100.0	100.0
AT3G27910.1	Thale cress	extracellular, golgi	39.68	50.34
Bra033610.1-P	Field mustard	plastid	45.58	45.21
Bra033606.1-P	Field mustard	cytosol	41.02	38.06
Bra030269.1-P	Field mustard	cytosol	37.27	37.67
Bra030282.1-P	Field mustard	cytosol	31.64	36.53
KRG89620	Soybean	cytosol	12.87	35.82
Bra031212.1-P	Field mustard	cytosol	36.46	34.96
PGSC0003DMT400042717	Potato	cytosol	31.64	33.05
Solyc04g051870.1.1	Tomato	extracellular	31.64	33.05
VIT_07s0031g01580.t01	Wine grape	plastid	31.64	32.69
KRH64149	Soybean	cytosol	31.37	32.59
KRH53797	Soybean	cytosol	31.37	32.32
Bra030283.1-P	Field mustard	cytosol	24.66	32.17
GSMUA_Achr2P14860_001	Banana	cytosol, endoplasmic reticulum, plastid	24.93	24.93
TraesCS2B01G130200.1	Wheat	cytosol, endoplasmic reticulum, plastid	23.06	22.81
Os07t0673700-01	Rice	cytosol	23.06	22.69
TraesCS2A01G111200.1	Wheat	cytosol, endoplasmic reticulum, plasma membrane	22.25	22.02
EER97716	Sorghum	plastid	22.25	21.96
Zm00001d007152_P001	Maize	plastid	21.98	21.81
HORVU2Hr1G019280.1	Barley	cytosol	18.5	18.21
TraesCS2D01G111900.1	Wheat	nucleus	18.5	15.16

Protein Annotations

Gene3D:2.120.10.80	MapMan:35.1	EnsemblPlantsGene:Bra025310	EnsemblPlants:Bra025310.1	EnsemblPlants:Bra025310.1-P	InterPro:F-box-like_dom_sf
InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001810	InterPro:IPR015915
InterPro:Kelch-typ_b-propeller	InterPro:Kelch_1	UniProt:M4E954	PFAM:PF00646	PFAM:PF01344	PANTHER:PTHR24414
PANTHER:PTHR24414:SF23	SMART:SM00256	SMART:SM00612	SUPFAM:SSF117281	SUPFAM:SSF81383	UniParc:UPI000253FC2E

Description

AT4G39240 (E=4e-105) | kelch repeat-containing F-box family protein

Coordinates

chrA06:+:22255767..22257023

Molecular Weight (calculated)

42150.8 Da

IEP (calculated)

8.375

GRAVY (calculated)

-0.253

Length

373 amino acids

Sequence
(BLAST)

001: MFSPVSANAG NPPPKCNKPT VSSLPLPDDI SMICLAYVPR CDHPSLSEVC KTFNQIIASS ELNRVRSLHK RTENVLYLAL RFSRDQKPIW YTLNQKPSKE
101: ESNSLNHKLV PYPSFPCLPC WGSNVIVIGR EMYVFGGCID DELTTDAFAI DCITRTCRSL PSMRVARGCA AFGVVDEKIY VLGGCNKKKS SKDWLEVFDL
201: KNQTWESFPG VCNKNLHEIT LNSFVMNEKI YIMDRIRSFV YDPKKNKWAS ESSLNSGWVV GSCVIDNMLY TFGIEKGISV YDPKARTWRK LKGVDEDLPD
301: MRGIQGGSRM VNHGGKLVIL FKRNESGETR IWCTEIALER RGQGEHWGKV LWTNIVATFE NSPTIVQCVD VII

Best Arabidopsis Sequence Match ( AT4G39240.1 )
(BLAST)

001: MPFSAASSSS VSSIAEEPPP KKQHDPSPSC SSYLLLLPDE IILNCLARLP KCYYPVISLV SKTFRRLIAS PEIYVERSLL RRTERVLYVV LRSHATETPR
101: WYTLNFKPFG NDSNNHRLVP IPSFPSIPCW GMSIVAIDSE IYVLGGCIDN ELVSTGFVVE CPSHTCRLLP SMKQARGCAA VGFFDGKLYV IGGCNPLSVN
201: WVEAFDLKTQ TWESGLGVNN VEMHDLTIRS FAIDDKIYIM DRKNSFVYDP KEGTLETDEL LDTQWSVGSC VIDGKIYTFG SKNRIWVFDP IAMVWDRLKG
301: LDDLPDKRDG SRMSNLGGNL AIMFNLEKGS TKICCTEIRL ERREGGKIWG TVLWSNIVIT LKEPSTIVRC LTVTV

Arabidopsis Description

F-box/kelch-repeat protein At4g39240 [Source:UniProtKB/Swiss-Prot;Acc:Q9T031]
SUBAcon: [cytosol,nucleus,peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.