Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- endoplasmic reticulum 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2B01G130200.1 | Wheat | cytosol, endoplasmic reticulum, plastid | 60.66 | 73.21 |
| TraesCS2A01G111200.1 | Wheat | cytosol, endoplasmic reticulum, plasma membrane | 60.44 | 72.94 |
| HORVU2Hr1G019280.1 | Barley | cytosol | 57.58 | 69.13 |
| Os07t0673700-01 | Rice | cytosol | 50.77 | 60.95 |
| EER97716 | Sorghum | plastid | 49.45 | 59.52 |
| Zm00001d007152_P001 | Maize | plastid | 47.69 | 57.71 |
| KRG89620 | Soybean | cytosol | 13.85 | 47.01 |
| GSMUA_Achr2P14860_001 | Banana | cytosol, endoplasmic reticulum, plastid | 35.82 | 43.7 |
| PGSC0003DMT400042717 | Potato | cytosol | 27.25 | 34.73 |
| Solyc04g051870.1.1 | Tomato | extracellular | 27.25 | 34.73 |
| VIT_07s0031g01580.t01 | Wine grape | plastid | 27.47 | 34.63 |
| KRH64149 | Soybean | cytosol | 27.25 | 34.54 |
| KRH53797 | Soybean | cytosol | 26.59 | 33.43 |
| CDY46225 | Canola | cytosol | 26.59 | 32.79 |
| Bra030269.1-P | Field mustard | cytosol | 26.59 | 32.79 |
| CDY15853 | Canola | cytosol | 26.37 | 32.52 |
| AT2G21950.1 | Thale cress | cytosol | 25.71 | 31.45 |
| Bra030282.1-P | Field mustard | cytosol | 16.26 | 22.91 |
| CDY15873 | Canola | cytosol | 7.91 | 22.09 |
| CDX99573 | Canola | cytosol | 14.95 | 21.12 |
| Bra031212.1-P | Field mustard | cytosol | 17.8 | 20.82 |
| CDY13796 | Canola | cytosol | 17.36 | 20.68 |
| CDY13795 | Canola | cytosol | 17.8 | 20.66 |
| AT3G27910.1 | Thale cress | extracellular, golgi | 12.97 | 20.07 |
| Bra033610.1-P | Field mustard | plastid | 16.48 | 19.95 |
| AT2G29770.1 | Thale cress | cytosol | 16.92 | 19.9 |
| CDY59764 | Canola | cytosol | 16.92 | 19.85 |
| CDY15078 | Canola | extracellular | 12.31 | 19.79 |
| CDY56757 | Canola | plastid | 16.26 | 19.68 |
| AT4G14905.2 | Thale cress | plastid | 16.04 | 19.62 |
| CDY44445 | Canola | cytosol | 15.38 | 18.72 |
| AT2G29780.1 | Thale cress | cytosol | 16.26 | 18.59 |
| AT2G29810.1 | Thale cress | cytosol | 15.6 | 18.54 |
| Bra025310.1-P | Field mustard | cytosol, plastid | 15.16 | 18.5 |
| CDY69098 | Canola | cytosol, plastid | 15.16 | 18.5 |
| AT2G29820.1 | Thale cress | cytosol | 15.6 | 18.3 |
| AT2G29830.1 | Thale cress | cytosol | 15.38 | 18.28 |
| Bra033606.1-P | Field mustard | cytosol | 16.04 | 18.16 |
| AT4G39240.1 | Thale cress | cytosol, nucleus, peroxisome | 14.95 | 18.13 |
| CDY15875 | Canola | cytosol | 11.87 | 17.82 |
| AT1G19460.1 | Thale cress | cytosol | 16.26 | 17.79 |
| AT1G19470.1 | Thale cress | cytosol | 15.82 | 17.48 |
| AT2G21680.1 | Thale cress | cytosol | 16.04 | 17.02 |
| CDX99574 | Canola | cytosol | 12.53 | 16.76 |
| AT2G29860.1 | Thale cress | cytosol | 8.79 | 16.67 |
| AT2G29800.1 | Thale cress | cytosol | 15.16 | 16.67 |
| Bra030283.1-P | Field mustard | cytosol | 10.33 | 16.43 |
| AT2G29600.1 | Thale cress | nucleus | 14.73 | 16.14 |
| CDX72708 | Canola | plastid | 16.92 | 10.21 |
Protein Annotations
| EnsemblPlants:TraesCS2D01G111900.1 | EnsemblPlantsGene:TraesCS2D01G111900 | Gene3D:2.120.10.80 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR015915 | InterPro:Kelch-typ_b-propeller | InterPro:Kelch_1 | ncoils:Coil | PANTHER:PTHR24414 | PANTHER:PTHR24414:SF23 |
| PFAM:PF01344 | SEG:seg | SMART:SM00612 | SUPFAM:SSF117281 | MapMan:35.1 | : |
Description
No Description!
Coordinates
chr2D:-:62063647..62065014
Molecular Weight (calculated)
48883.3 Da
IEP (calculated)
11.075
GRAVY (calculated)
-0.361
Length
455 amino acids
Sequence
(BLAST)
(BLAST)
001: MSAQNFVCFP WAGGPEEESD EPPSSNQPCS SRAQTLLKKK NKKKRKKKKK KKKKKESCTQ TLRRIILLPH SSPTTTASHV RLTRLVAPAA GGHPRNPHSR
101: SARRPGGPVH RAPPARRAPN PRPRLPRSAR PPLPPPGAPP GRPVPPPPLR PPHRHLGPAA LLRVPSLLPA AAASRVAPSA SPLPSDPRLL LLGRRVNGHR
201: LYLVGGSVAG IPASSVQILD TRTRSWSIGP RLSSPREFAA AAVLSGVLFV AGGCVPSSPF WAEALDLASP HARWSTVPSP DHLREKWMHG CVSLAGKVLA
301: VADRGGLVYN PAAPPGEAWA PVSPVLDMGW KGRAAVVGGI LYSYDYMGQV KGYDPDTDSW NTVEGLEKEL PRFLCGATLA NVGGLLYLIW EGKWKGKASK
401: GEGKVKDMLV IEWATIEVTR AEEGRLSGKV ISRDTAVFTD MPRGSAITHC ISLDL
101: SARRPGGPVH RAPPARRAPN PRPRLPRSAR PPLPPPGAPP GRPVPPPPLR PPHRHLGPAA LLRVPSLLPA AAASRVAPSA SPLPSDPRLL LLGRRVNGHR
201: LYLVGGSVAG IPASSVQILD TRTRSWSIGP RLSSPREFAA AAVLSGVLFV AGGCVPSSPF WAEALDLASP HARWSTVPSP DHLREKWMHG CVSLAGKVLA
301: VADRGGLVYN PAAPPGEAWA PVSPVLDMGW KGRAAVVGGI LYSYDYMGQV KGYDPDTDSW NTVEGLEKEL PRFLCGATLA NVGGLLYLIW EGKWKGKASK
401: GEGKVKDMLV IEWATIEVTR AEEGRLSGKV ISRDTAVFTD MPRGSAITHC ISLDL
001: MAATTSSGDE PPETKSPAQL IPLLSEDVAL SCLARVPRCH YPILSLVSKT FRSLPTSPLL YATRALVGAT ENILYVAIRI PPESGACWFT LLHRTLSNST
101: NSKMLVPIPS CPSPSLVGSA YVVVDSEIYV IGGSIRDVPS SSVWVLDCRF HTWRRVSNMR VGREFAAAGV IDGKIYVIGG CVVDNWARSI NWAEMFDIKT
201: QTWEPVASPG MEVREKWMHA SAVMEGKVYA MADRNGVVYE PKEKKWEMPE KRLDLGWRGR ACVIENILYC YDYLGKIRGY DPKERIWREL KGVESLPKFL
301: CGATMANRGG KLTVLWEGKA GSGGSRRMEI WCAEIDVGRR GEREIWGKIE WSGTVLTVPN ESAIVNCLAA TV
101: NSKMLVPIPS CPSPSLVGSA YVVVDSEIYV IGGSIRDVPS SSVWVLDCRF HTWRRVSNMR VGREFAAAGV IDGKIYVIGG CVVDNWARSI NWAEMFDIKT
201: QTWEPVASPG MEVREKWMHA SAVMEGKVYA MADRNGVVYE PKEKKWEMPE KRLDLGWRGR ACVIENILYC YDYLGKIRGY DPKERIWREL KGVESLPKFL
301: CGATMANRGG KLTVLWEGKA GSGGSRRMEI WCAEIDVGRR GEREIWGKIE WSGTVLTVPN ESAIVNCLAA TV
Arabidopsis Description
SKIP6F-box/kelch-repeat protein SKIP6 [Source:UniProtKB/Swiss-Prot;Acc:Q9SJ04]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.