CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plasma membrane 1
cytosol 1
mitochondrion 1
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d007152_P001	Maize	plastid	92.59	93.09
Os07t0673700-01	Rice	cytosol	82.01	81.79
TraesCS2B01G130200.1	Wheat	cytosol, endoplasmic reticulum, plastid	77.25	77.45
TraesCS2A01G111200.1	Wheat	cytosol, endoplasmic reticulum, plasma membrane	76.19	76.39
HORVU2Hr1G019280.1	Barley	cytosol	65.08	64.91
GSMUA_Achr2P14860_001	Banana	cytosol, endoplasmic reticulum, plastid	50.79	51.47
TraesCS2D01G111900.1	Wheat	nucleus	59.52	49.45
KRG89620	Soybean	cytosol	16.4	46.27
KRH53797	Soybean	cytosol	39.95	41.71
VIT_07s0031g01580.t01	Wine grape	plastid	39.42	41.27
KRH64149	Soybean	cytosol	38.36	40.39
Bra030269.1-P	Field mustard	cytosol	39.42	40.38
CDY15853	Canola	cytosol	39.15	40.11
CDY46225	Canola	cytosol	38.89	39.84
AT2G21950.1	Thale cress	cytosol	38.62	39.25
Solyc04g051870.1.1	Tomato	extracellular	36.77	38.94
PGSC0003DMT400042717	Potato	cytosol	36.51	38.66
CDY15875	Canola	cytosol	21.43	26.73
Bra030283.1-P	Field mustard	cytosol	19.84	26.22
CDY56757	Canola	plastid	25.13	25.27
CDX99573	Canola	cytosol	21.16	24.84
Bra030282.1-P	Field mustard	cytosol	21.16	24.77
Bra033610.1-P	Field mustard	plastid	24.6	24.73
CDX99574	Canola	cytosol	22.22	24.71
CDY13796	Canola	cytosol	24.34	24.08
CDY59764	Canola	cytosol	24.34	23.71
AT2G29860.1	Thale cress	cytosol	14.81	23.33
CDY15078	Canola	extracellular	17.46	23.32
Bra031212.1-P	Field mustard	cytosol	23.81	23.14
CDY13795	Canola	cytosol	23.81	22.96
AT3G27910.1	Thale cress	extracellular, golgi	17.46	22.45
Bra033606.1-P	Field mustard	cytosol	23.81	22.39
Bra025310.1-P	Field mustard	cytosol, plastid	21.96	22.25
CDY69098	Canola	cytosol, plastid	21.96	22.25
AT2G29830.1	Thale cress	cytosol	22.49	22.19
CDY44445	Canola	cytosol	21.96	22.19
AT4G14905.2	Thale cress	plastid	21.69	22.04
AT2G29770.1	Thale cress	cytosol	22.49	21.96
AT4G39240.1	Thale cress	cytosol, nucleus, peroxisome	21.69	21.87
AT2G29810.1	Thale cress	cytosol	21.96	21.67
AT1G19460.1	Thale cress	cytosol	23.55	21.39
AT2G29780.1	Thale cress	cytosol	22.49	21.36
AT2G29820.1	Thale cress	cytosol	21.43	20.88
CDY15873	Canola	cytosol	8.99	20.86
AT1G19470.1	Thale cress	cytosol	22.49	20.63
AT2G21680.1	Thale cress	cytosol	22.22	19.58
AT2G29600.1	Thale cress	nucleus	20.9	19.04
AT2G29800.1	Thale cress	cytosol	20.11	18.36
CDX72708	Canola	plastid	26.45	13.26

Protein Annotations

Gene3D:2.120.10.80	MapMan:35.1	EntrezGene:8074436	UniProt:C5X5I4	EnsemblPlants:EER97716	ProteinID:EER97716
ProteinID:EER97716.1	InterPro:F-box-like_dom_sf	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR015915
InterPro:Kelch-typ_b-propeller	InterPro:Kelch_1	PFAM:PF01344	PANTHER:PTHR24414	PANTHER:PTHR24414:SF23	SMART:SM00612
EnsemblPlantsGene:SORBI_3002G414500	SUPFAM:SSF117281	SUPFAM:SSF81383	UniParc:UPI0001A83578	RefSeq:XP_002461195.1	SEG:seg

Description

hypothetical protein

Coordinates

chr2:+:76176108..76180108

Molecular Weight (calculated)

40115.5 Da

IEP (calculated)

9.027

GRAVY (calculated)

0.087

Length

378 amino acids

Sequence
(BLAST)

001: MSASAEPTSP PQPTAQVRGS LIPALPDDLA VHCIALLPRA AHPSLALVSR AFHALLCRHP EPLLAARRAL RRSEPHVLLS LRPPSSASPL FFLLLPHPGW
101: PPLPLPSPPV PVSSSASAAT DGTRLFLVGG SVSAVPAASV QILDPRARSW SVGPRLSSTR EFAAAVAHSG ALFVAGGCVP SSPFWAEALD LSTPNAKWRP
201: VASPAHLREK WMHGCASLAG KVLAVADRGG LAYDPAAPPA EAWAPVSPVL DMGWKGRAAV VEGILYSYDY LGQVKGYDPD TDSWSTVEGL ERELPKFLCG
301: ATLANVGGLL YLVWEGKWKG KGKGKGEVRS MVVIEWASIQ ITRVDEGRLR GKLVSRDTVL FPDVPRGSTI THCIALEL

Best Arabidopsis Sequence Match ( AT2G21950.1 )
(BLAST)

001: MAATTSSGDE PPETKSPAQL IPLLSEDVAL SCLARVPRCH YPILSLVSKT FRSLPTSPLL YATRALVGAT ENILYVAIRI PPESGACWFT LLHRTLSNST
101: NSKMLVPIPS CPSPSLVGSA YVVVDSEIYV IGGSIRDVPS SSVWVLDCRF HTWRRVSNMR VGREFAAAGV IDGKIYVIGG CVVDNWARSI NWAEMFDIKT
201: QTWEPVASPG MEVREKWMHA SAVMEGKVYA MADRNGVVYE PKEKKWEMPE KRLDLGWRGR ACVIENILYC YDYLGKIRGY DPKERIWREL KGVESLPKFL
301: CGATMANRGG KLTVLWEGKA GSGGSRRMEI WCAEIDVGRR GEREIWGKIE WSGTVLTVPN ESAIVNCLAA TV

Arabidopsis Description

SKIP6F-box/kelch-repeat protein SKIP6 [Source:UniProtKB/Swiss-Prot;Acc:Q9SJ04]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.