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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 1
  • cytosol 3
  • mitochondrion 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra030283.1-P Field mustard cytosol 65.68 69.58
CDX99574 Canola cytosol 69.97 62.35
CDX99573 Canola cytosol 57.76 54.35
CDY15873 Canola cytosol 22.77 42.33
AT2G29860.1 Thale cress cytosol 30.36 38.33
AT2G29810.1 Thale cress cytosol 46.2 36.55
AT2G29830.1 Thale cress cytosol 43.89 34.73
CDY59764 Canola cytosol 41.58 32.47
CDY13796 Canola cytosol 40.92 32.46
AT2G29780.1 Thale cress cytosol 42.24 32.16
CDY13795 Canola cytosol 40.92 31.63
AT2G29770.1 Thale cress cytosol 38.94 30.49
AT2G29820.1 Thale cress cytosol 38.61 30.15
CDY15078 Canola extracellular 27.39 29.33
CDY46225 Canola cytosol 34.98 28.73
CDY15853 Canola cytosol 34.32 28.18
CDY69098 Canola cytosol, plastid 34.65 28.15
KRH64149 Soybean cytosol 33.33 28.13
CDY44445 Canola cytosol 34.32 27.81
AT2G29600.1 Thale cress nucleus 36.96 26.99
PGSC0003DMT400042717 Potato cytosol 31.68 26.89
CDY56757 Canola plastid 33.33 26.86
Solyc04g051870.1.1 Tomato extracellular 31.35 26.61
AT2G29800.1 Thale cress cytosol 35.97 26.33
VIT_07s0031g01580.t01 Wine grape plastid 30.36 25.48
KRH53797 Soybean cytosol 30.03 25.14
GSMUA_Achr2P14860_001 Banana cytosol, endoplasmic reticulum, plastid 29.37 23.86
TraesCS2B01G130200.1 Wheat cytosol, endoplasmic reticulum, plastid 27.06 21.75
Zm00001d007152_P001 Maize plastid 26.73 21.54
EER97716 Sorghum plastid 26.73 21.43
TraesCS2A01G111200.1 Wheat cytosol, endoplasmic reticulum, plasma membrane 26.4 21.22
Os07t0673700-01 Rice cytosol 25.74 20.58
KRG89620 Soybean cytosol 8.25 18.66
HORVU2Hr1G019280.1 Barley cytosol 21.12 16.89
CDX72708 Canola plastid 31.35 12.6
TraesCS2D01G111900.1 Wheat nucleus 17.82 11.87
Protein Annotations
Gene3D:2.120.10.80MapMan:35.1UniProt:A0A078FN52EnsemblPlants:CDY15875ProteinID:CDY15875ProteinID:CDY15875.1
InterPro:F-box-like_dom_sfInterPro:F-box_domGO:GO:0003674GO:GO:0005488GO:GO:0005515EnsemblPlantsGene:GSBRNA2T00090233001
InterPro:IPR001810InterPro:IPR015915InterPro:Kelch-typ_b-propellerInterPro:Kelch_1PFAM:PF00646PFAM:PF01344
PANTHER:PTHR24414PANTHER:PTHR24414:SF23SUPFAM:SSF117281SUPFAM:SSF81383UniParc:UPI0004EED184SEG:seg
Description
BnaA04g12360DBnaA04g12360D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FN52]
Coordinates
chrLK032059:-:226466..227577
Molecular Weight (calculated)
33927.8 Da
IEP (calculated)
9.103
GRAVY (calculated)
-0.207
Length
303 amino acids
Sequence
(BLAST)
001: MAQKQEEEEE VKKSFAHLPY DVTEHCLAIA PRRHYPNLSL ASKSFRRILR SPELYQRRST LGVTEPVLYA SVGFPPSQTP SWHTLHRNHF SLRLLKIASL
101: PSRLLSAVAT VGTEMYVLGG SVGGNPTSDV NLIDCRFHTS QTLPRMKRAL SRAVAGAIDG KVYVIGGCRK KSDDWVEVFD VKTQAWRDMP AVLPRAHWEG
201: QFSHSFLGPP LAVMDGKIFV LDPSATCLVF DPSVGALVEW DDGGELMSLW QASSCVVDDK LYTIDTGRSL KYPIVVYDPK AKVKRWKPVY GVNLRRDLLP
301: FDS
Best Arabidopsis Sequence Match ( AT2G29830.1 )
(BLAST)
001: MVVLSEIPGD PNEDNQNENP QEEVENLPIL LQLPEELIAS IVALIPRCHY PSLSLVSRAF RHLITSQELY VARSNLGFTE PVLYALIGFQ AYTRPSWFFL
101: RRSNFPLQLH RIRSLPPMLS GAAVVTIDYK MYVMGGCIGY NHPASSNVIV IDCRFHTWKY LPDMKRARCR AATGIIDGRI YVIGGCKKQD ADWVEVFDVT
201: TQSWETVPSE CPNDANENGE FITYVVMQGR LFILDLECCF SYEPVQGLWE SWDDGSELMR FWHSSSSCVV GDLLYALDLT CALEHPIVVY YPNELVWRPV
301: MGVDTAHLPI LTEYTSTLAN FDGKLVILGG GDCSESSSEI WCVEIALETR QGDQIWGVVK SVSIVSRDLP MRHVIELCRT VMV
Arabidopsis Description
F-box/kelch-repeat protein At2g29830 [Source:UniProtKB/Swiss-Prot;Acc:O82373]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.