Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT2G29780.1 | Thale cress | cytosol | 55.81 | 54.27 |
| AT2G29810.1 | Thale cress | cytosol | 50.39 | 50.91 |
| AT2G29860.1 | Thale cress | cytosol | 30.75 | 49.58 |
| AT2G29830.1 | Thale cress | cytosol | 44.7 | 45.17 |
| AT2G29800.1 | Thale cress | cytosol | 46.77 | 43.72 |
| AT2G29820.1 | Thale cress | cytosol | 43.15 | 43.04 |
| AT2G29600.1 | Thale cress | nucleus | 45.74 | 42.65 |
| AT1G19460.1 | Thale cress | cytosol | 44.96 | 41.83 |
| CDX99574 | Canola | cytosol | 36.69 | 41.76 |
| AT1G19470.1 | Thale cress | cytosol | 44.44 | 41.75 |
| CDX99573 | Canola | cytosol | 34.63 | 41.61 |
| Bra030282.1-P | Field mustard | cytosol | 34.37 | 41.18 |
| CDY15873 | Canola | cytosol | 17.31 | 41.1 |
| CDY15875 | Canola | cytosol | 30.49 | 38.94 |
| Bra030283.1-P | Field mustard | cytosol | 28.68 | 38.81 |
| AT2G21680.1 | Thale cress | cytosol | 39.79 | 35.9 |
| KRG89620 | Soybean | cytosol | 11.89 | 34.33 |
| AT3G27910.1 | Thale cress | extracellular, golgi | 25.84 | 34.01 |
| AT2G21950.1 | Thale cress | cytosol | 31.78 | 33.06 |
| KRH64149 | Soybean | cytosol | 28.68 | 30.92 |
| AT4G39240.1 | Thale cress | cytosol, nucleus, peroxisome | 29.72 | 30.67 |
| KRH53797 | Soybean | cytosol | 28.17 | 30.11 |
| AT4G14905.2 | Thale cress | plastid | 28.68 | 29.84 |
| Solyc04g051870.1.1 | Tomato | extracellular | 27.13 | 29.41 |
| PGSC0003DMT400042717 | Potato | cytosol | 27.13 | 29.41 |
| VIT_07s0031g01580.t01 | Wine grape | plastid | 25.06 | 26.87 |
| GSMUA_Achr2P14860_001 | Banana | cytosol, endoplasmic reticulum, plastid | 24.03 | 24.93 |
| TraesCS2A01G111200.1 | Wheat | cytosol, endoplasmic reticulum, plasma membrane | 23.77 | 24.4 |
| TraesCS2B01G130200.1 | Wheat | cytosol, endoplasmic reticulum, plastid | 23.77 | 24.4 |
| EER97716 | Sorghum | plastid | 21.96 | 22.49 |
| Os07t0673700-01 | Rice | cytosol | 21.71 | 22.16 |
| Zm00001d007152_P001 | Maize | plastid | 21.19 | 21.81 |
| HORVU2Hr1G019280.1 | Barley | cytosol | 20.41 | 20.84 |
| TraesCS2D01G111900.1 | Wheat | nucleus | 19.9 | 16.92 |
Protein Annotations
| Gene3D:2.120.10.80 | MapMan:35.1 | EntrezGene:817527 | ProteinID:AAC35224.1 | ProteinID:AAT69169.1 | ProteinID:AEC08302.1 |
| ArrayExpress:AT2G29770 | EnsemblPlantsGene:AT2G29770 | RefSeq:AT2G29770 | TAIR:AT2G29770 | RefSeq:AT2G29770-TAIR-G | EnsemblPlants:AT2G29770.1 |
| TAIR:AT2G29770.1 | EMBL:AY219120 | Unigene:At.38446 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR015915 | InterPro:Kelch-typ_b-propeller | InterPro:Kelch_1 | RefSeq:NP_180538.1 | UniProt:O82379 | PFAM:PF01344 |
| PO:PO:0007611 | PO:PO:0009046 | PANTHER:PTHR24414 | PANTHER:PTHR24414:SF23 | SMART:SM00612 | SUPFAM:SSF117281 |
| UniParc:UPI00000069A7 | SEG:seg | : | : | : | : |
Description
F-box/LRR-repeat/kelch-repeat protein At2g29770 [Source:UniProtKB/Swiss-Prot;Acc:O82379]
Coordinates
chr2:-:12715411..12716875
Molecular Weight (calculated)
43926.1 Da
IEP (calculated)
7.679
GRAVY (calculated)
-0.043
Length
387 amino acids
Sequence
(BLAST)
(BLAST)
001: MVFISETSDD GSNGGDPTKN PQEEEEENLP PIPQGIPDEL IESTVLLIRR CHYPTLSLLS KTFRRVISSS ELYKSRFILN LTDSVLYALI GFSPYNTTNL
101: YILNCNIPRN ISLHLREIKS LPPLNHGSAV VTIGYHMYVI GGHNRLHQPT SNVSIIDLRF HTSCSLPRMQ RTRVYAAAGV IDGRIYVIGG CVKRNDHWIE
201: VFDIENRIWS SVPHHRYCNG SSLRGEGFVT SVVMQNKIYI LDSLFGFAYE PRHGTLQSLG FETQFMFLWR DPCCVIEGLL YCIDPMCVLG HAIVVYDPNE
301: LIWRRVKGAY ILPKFCYYQC KMANFGGKLA ILGCSNSSQR GLKDVWFVEI ELENRQSGEI WGKVDSLAIV LRSVKSPSID LFRSVTF
101: YILNCNIPRN ISLHLREIKS LPPLNHGSAV VTIGYHMYVI GGHNRLHQPT SNVSIIDLRF HTSCSLPRMQ RTRVYAAAGV IDGRIYVIGG CVKRNDHWIE
201: VFDIENRIWS SVPHHRYCNG SSLRGEGFVT SVVMQNKIYI LDSLFGFAYE PRHGTLQSLG FETQFMFLWR DPCCVIEGLL YCIDPMCVLG HAIVVYDPNE
301: LIWRRVKGAY ILPKFCYYQC KMANFGGKLA ILGCSNSSQR GLKDVWFVEI ELENRQSGEI WGKVDSLAIV LRSVKSPSID LFRSVTF
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.