Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT2G29770.1 | Thale cress | cytosol | 54.27 | 55.81 |
| AT2G29860.1 | Thale cress | cytosol | 31.41 | 52.08 |
| AT2G29810.1 | Thale cress | cytosol | 49.5 | 51.44 |
| AT2G29600.1 | Thale cress | nucleus | 49.25 | 47.23 |
| AT2G29800.1 | Thale cress | cytosol | 48.24 | 46.38 |
| AT2G29830.1 | Thale cress | cytosol | 43.47 | 45.17 |
| AT2G29820.1 | Thale cress | cytosol | 43.72 | 44.85 |
| CDY15875 | Canola | cytosol | 32.16 | 42.24 |
| Bra030282.1-P | Field mustard | cytosol | 33.92 | 41.8 |
| CDX99573 | Canola | cytosol | 33.67 | 41.61 |
| Bra030283.1-P | Field mustard | cytosol | 29.9 | 41.61 |
| CDX99574 | Canola | cytosol | 34.17 | 40.0 |
| AT1G19470.1 | Thale cress | cytosol | 41.21 | 39.81 |
| AT1G19460.1 | Thale cress | cytosol | 40.95 | 39.18 |
| AT2G21680.1 | Thale cress | cytosol | 37.69 | 34.97 |
| AT3G27910.1 | Thale cress | extracellular, golgi | 25.63 | 34.69 |
| CDY15873 | Canola | cytosol | 14.07 | 34.36 |
| AT2G21950.1 | Thale cress | cytosol | 30.15 | 32.26 |
| KRH64149 | Soybean | cytosol | 27.89 | 30.92 |
| PGSC0003DMT400042717 | Potato | cytosol | 27.64 | 30.81 |
| KRG89620 | Soybean | cytosol | 10.3 | 30.6 |
| Solyc04g051870.1.1 | Tomato | extracellular | 27.39 | 30.53 |
| AT4G39240.1 | Thale cress | cytosol, nucleus, peroxisome | 28.64 | 30.4 |
| KRH53797 | Soybean | cytosol | 26.88 | 29.56 |
| AT4G14905.2 | Thale cress | plastid | 27.14 | 29.03 |
| VIT_07s0031g01580.t01 | Wine grape | plastid | 25.13 | 27.7 |
| GSMUA_Achr2P14860_001 | Banana | cytosol, endoplasmic reticulum, plastid | 24.12 | 25.74 |
| TraesCS2A01G111200.1 | Wheat | cytosol, endoplasmic reticulum, plasma membrane | 22.11 | 23.34 |
| TraesCS2B01G130200.1 | Wheat | cytosol, endoplasmic reticulum, plastid | 22.11 | 23.34 |
| EER97716 | Sorghum | plastid | 21.36 | 22.49 |
| Os07t0673700-01 | Rice | cytosol | 21.36 | 22.43 |
| Zm00001d007152_P001 | Maize | plastid | 20.6 | 21.81 |
| HORVU2Hr1G019280.1 | Barley | cytosol | 18.84 | 19.79 |
| TraesCS2D01G111900.1 | Wheat | nucleus | 18.59 | 16.26 |
Protein Annotations
| Gene3D:2.120.10.80 | MapMan:35.1 | EntrezGene:817528 | ProteinID:AAC35223.1 | ProteinID:AEC08303.1 | ArrayExpress:AT2G29780 |
| EnsemblPlantsGene:AT2G29780 | RefSeq:AT2G29780 | TAIR:AT2G29780 | RefSeq:AT2G29780-TAIR-G | EnsemblPlants:AT2G29780.1 | TAIR:AT2G29780.1 |
| Unigene:At.66272 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | InterPro:IPR015915 | InterPro:Kelch-typ_b-propeller |
| InterPro:Kelch_1 | RefSeq:NP_180539.1 | UniProt:O82378 | PFAM:PF01344 | PO:PO:0000013 | PO:PO:0000037 |
| PO:PO:0000084 | PO:PO:0000230 | PO:PO:0001016 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 |
| PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 |
| PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 |
| PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 |
| PANTHER:PTHR24414 | PANTHER:PTHR24414:SF23 | SMART:SM00612 | SUPFAM:SSF117281 | UniParc:UPI00000A5A04 | : |
Description
Putative F-box/kelch-repeat protein At2g29780 [Source:UniProtKB/Swiss-Prot;Acc:O82378]
Coordinates
chr2:-:12717786..12719328
Molecular Weight (calculated)
44535.0 Da
IEP (calculated)
6.428
GRAVY (calculated)
-0.016
Length
398 amino acids
Sequence
(BLAST)
(BLAST)
001: MAIISETSDD GSHGGVPNKK PEELHKNPKE DDHQEEEVEN HPPIPRQIPQ ALIRRTVALI KRCHYPSLSL LSKAFRIVIS SPELHQTRSS LNLTEPVLYA
101: LIGFPPHSFP NWFILNHNIT RNIPLRLSAI GSLPPMNPGS AVVTIGYKMY VIGGLIGPNN PVKTVFVIDC RVHTCNYLPT MHRARYRAVA EVINGKIYVI
201: GGCEKRYDDW IEVFDVVTGI WSTVPDRSHF MSSLPGGGFV TSVVMQNKIY ILDATCGLVY DPIDGTWESG ELGTTLKSYW YKPCCVIEDL LYSFDPYCLQ
301: GSPINVYDPN VMVWTPMMGT GIRAFPDLDY FECKMANFGG KLMVFGATYN NPVTDTWCIE MALIKGETGP ILGMIDSMVP VLRSVYSPYI DLCRSVTF
101: LIGFPPHSFP NWFILNHNIT RNIPLRLSAI GSLPPMNPGS AVVTIGYKMY VIGGLIGPNN PVKTVFVIDC RVHTCNYLPT MHRARYRAVA EVINGKIYVI
201: GGCEKRYDDW IEVFDVVTGI WSTVPDRSHF MSSLPGGGFV TSVVMQNKIY ILDATCGLVY DPIDGTWESG ELGTTLKSYW YKPCCVIEDL LYSFDPYCLQ
301: GSPINVYDPN VMVWTPMMGT GIRAFPDLDY FECKMANFGG KLMVFGATYN NPVTDTWCIE MALIKGETGP ILGMIDSMVP VLRSVYSPYI DLCRSVTF
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.