Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2B01G130200.1 | Wheat | cytosol, endoplasmic reticulum, plastid | 78.36 | 78.78 |
| TraesCS2A01G111200.1 | Wheat | cytosol, endoplasmic reticulum, plasma membrane | 77.57 | 77.98 |
| Os07t0673700-01 | Rice | cytosol | 65.7 | 65.7 |
| EER97716 | Sorghum | plastid | 64.91 | 65.08 |
| Zm00001d007152_P001 | Maize | plastid | 62.53 | 63.03 |
| TraesCS2D01G111900.1 | Wheat | nucleus | 69.13 | 57.58 |
| KRG89620 | Soybean | cytosol | 16.89 | 47.76 |
| GSMUA_Achr2P14860_001 | Banana | cytosol, endoplasmic reticulum, plastid | 44.59 | 45.31 |
| KRH53797 | Soybean | cytosol | 33.51 | 35.08 |
| KRH64149 | Soybean | cytosol | 32.72 | 34.54 |
| Solyc04g051870.1.1 | Tomato | extracellular | 32.19 | 34.17 |
| PGSC0003DMT400042717 | Potato | cytosol | 32.19 | 34.17 |
| Bra030269.1-P | Field mustard | cytosol | 33.25 | 34.15 |
| VIT_07s0031g01580.t01 | Wine grape | plastid | 32.45 | 34.07 |
| CDY46225 | Canola | cytosol | 32.98 | 33.88 |
| CDY15853 | Canola | cytosol | 32.98 | 33.88 |
| AT2G21950.1 | Thale cress | cytosol | 32.19 | 32.8 |
| Bra030282.1-P | Field mustard | cytosol | 21.11 | 24.77 |
| CDX99573 | Canola | cytosol | 20.05 | 23.6 |
| AT3G27910.1 | Thale cress | extracellular, golgi | 17.15 | 22.11 |
| CDY15873 | Canola | cytosol | 9.5 | 22.09 |
| CDY15078 | Canola | extracellular | 16.36 | 21.91 |
| CDY13796 | Canola | cytosol | 21.37 | 21.2 |
| CDY15875 | Canola | cytosol | 16.89 | 21.12 |
| Bra031212.1-P | Field mustard | cytosol | 21.64 | 21.08 |
| CDY13795 | Canola | cytosol | 21.64 | 20.92 |
| CDY59764 | Canola | cytosol | 21.37 | 20.88 |
| AT2G29770.1 | Thale cress | cytosol | 20.84 | 20.41 |
| CDY56757 | Canola | plastid | 19.79 | 19.95 |
| Bra030283.1-P | Field mustard | cytosol | 14.78 | 19.58 |
| Bra033610.1-P | Field mustard | plastid | 19.26 | 19.41 |
| CDX99574 | Canola | cytosol | 17.15 | 19.12 |
| AT2G29780.1 | Thale cress | cytosol | 19.79 | 18.84 |
| AT2G29810.1 | Thale cress | cytosol | 19.0 | 18.8 |
| CDY69098 | Canola | cytosol, plastid | 18.21 | 18.5 |
| Bra025310.1-P | Field mustard | cytosol, plastid | 18.21 | 18.5 |
| CDY44445 | Canola | cytosol | 17.94 | 18.18 |
| AT1G19460.1 | Thale cress | cytosol | 19.79 | 18.03 |
| AT2G29830.1 | Thale cress | cytosol | 18.21 | 18.02 |
| AT2G29820.1 | Thale cress | cytosol | 18.21 | 17.78 |
| AT4G14905.2 | Thale cress | plastid | 17.41 | 17.74 |
| AT1G19470.1 | Thale cress | cytosol | 19.26 | 17.72 |
| AT2G29860.1 | Thale cress | cytosol | 11.08 | 17.5 |
| AT4G39240.1 | Thale cress | cytosol, nucleus, peroxisome | 17.15 | 17.33 |
| AT2G21680.1 | Thale cress | cytosol | 19.0 | 16.78 |
| Bra033606.1-P | Field mustard | cytosol | 17.68 | 16.67 |
| AT2G29800.1 | Thale cress | cytosol | 17.41 | 15.94 |
| AT2G29600.1 | Thale cress | nucleus | 17.41 | 15.9 |
| CDX72708 | Canola | plastid | 21.37 | 10.74 |
Protein Annotations
| EnsemblPlants:HORVU2Hr1G019280.1 | EnsemblPlantsGene:HORVU2Hr1G019280 | Gene3D:2.120.10.80 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR015915 | InterPro:Kelch-typ_b-propeller | InterPro:Kelch_1 | PANTHER:PTHR24414 | PANTHER:PTHR24414:SF23 | PFAM:PF01344 |
| SEG:seg | SMART:SM00612 | SUPFAM:SSF117281 | MapMan:35.1 | : | : |
Description
No Description!
Coordinates
chrchr2H:+:50349765..50350904
Molecular Weight (calculated)
33988.1 Da
IEP (calculated)
9.160
GRAVY (calculated)
0.034
Length
379 amino acids
Sequence
(BLAST)
(BLAST)
001: XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXLAARRRL CRSDPHIVIS VRPPYSASPR FFLLLPHPGW
101: PPLPLPSPPI PVSSSSAVAV NGHRLYLVGG SVAGVPASSV QILDSRTRSW SIGPRLSSPR EFAAAAVLPG VLFVAGGCVP SSSFWAEALD LASPRAKWSP
201: VPSPDHLREK WMHGCVSLSG KVLAVADRGG LVYNPAAPRD EAWAPVSPVL DMGWKGRAAV VGGILYSYDY MGQVKGYDTD TDSWNTVEGL EKELPRFLCG
301: ATLANVGGLL YLIWEGKWKG KASKGEGKVK DMLVIEWATI EVTRAEEGRL IGKVISRDTV VFTDMPRGSA ITHCISLDL
101: PPLPLPSPPI PVSSSSAVAV NGHRLYLVGG SVAGVPASSV QILDSRTRSW SIGPRLSSPR EFAAAAVLPG VLFVAGGCVP SSSFWAEALD LASPRAKWSP
201: VPSPDHLREK WMHGCVSLSG KVLAVADRGG LVYNPAAPRD EAWAPVSPVL DMGWKGRAAV VGGILYSYDY MGQVKGYDTD TDSWNTVEGL EKELPRFLCG
301: ATLANVGGLL YLIWEGKWKG KASKGEGKVK DMLVIEWATI EVTRAEEGRL IGKVISRDTV VFTDMPRGSA ITHCISLDL
001: MAATTSSGDE PPETKSPAQL IPLLSEDVAL SCLARVPRCH YPILSLVSKT FRSLPTSPLL YATRALVGAT ENILYVAIRI PPESGACWFT LLHRTLSNST
101: NSKMLVPIPS CPSPSLVGSA YVVVDSEIYV IGGSIRDVPS SSVWVLDCRF HTWRRVSNMR VGREFAAAGV IDGKIYVIGG CVVDNWARSI NWAEMFDIKT
201: QTWEPVASPG MEVREKWMHA SAVMEGKVYA MADRNGVVYE PKEKKWEMPE KRLDLGWRGR ACVIENILYC YDYLGKIRGY DPKERIWREL KGVESLPKFL
301: CGATMANRGG KLTVLWEGKA GSGGSRRMEI WCAEIDVGRR GEREIWGKIE WSGTVLTVPN ESAIVNCLAA TV
101: NSKMLVPIPS CPSPSLVGSA YVVVDSEIYV IGGSIRDVPS SSVWVLDCRF HTWRRVSNMR VGREFAAAGV IDGKIYVIGG CVVDNWARSI NWAEMFDIKT
201: QTWEPVASPG MEVREKWMHA SAVMEGKVYA MADRNGVVYE PKEKKWEMPE KRLDLGWRGR ACVIENILYC YDYLGKIRGY DPKERIWREL KGVESLPKFL
301: CGATMANRGG KLTVLWEGKA GSGGSRRMEI WCAEIDVGRR GEREIWGKIE WSGTVLTVPN ESAIVNCLAA TV
Arabidopsis Description
SKIP6F-box/kelch-repeat protein SKIP6 [Source:UniProtKB/Swiss-Prot;Acc:Q9SJ04]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.