CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 5
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX68112
CDX73212
CDX80590
CDX85931
CDX87650
CDY13521
CDY39073

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G39240.1	CDX68112	AT1G75950.1	21798944
AT4G39240.1	CDX73212	AT1G75950.1	21798944
AT4G39240.1	CDX80590	AT1G75950.1	21798944
AT4G39240.1	CDX85931	AT1G75950.1	21798944
AT4G39240.1	CDX87650	AT1G75950.1	21798944
AT4G39240.1	CDY13521	AT1G75950.1	21798944
AT4G39240.1	CDY39073	AT1G75950.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY56757	Canola	plastid	41.38	82.98
AT4G39240.1	Thale cress	cytosol, nucleus, peroxisome	30.77	61.87
AT4G14905.2	Thale cress	plastid	23.74	48.12
CDY44445	Canola	cytosol	22.68	45.72
CDY69098	Canola	cytosol, plastid	22.28	45.04
CDY15853	Canola	cytosol	20.16	41.19
CDY46225	Canola	cytosol	19.36	39.57
KRG89620	Soybean	cytosol	6.76	38.06
CDY59764	Canola	cytosol	18.57	36.08
CDY13795	Canola	cytosol	18.57	35.71
CDY13796	Canola	cytosol	18.04	35.6
CDX99573	Canola	cytosol	14.32	33.54
KRH53797	Soybean	cytosol	15.92	33.15
KRH64149	Soybean	cytosol	15.78	33.15
PGSC0003DMT400042717	Potato	cytosol	15.52	32.77
VIT_07s0031g01580.t01	Wine grape	plastid	15.52	32.41
Solyc04g051870.1.1	Tomato	extracellular	15.12	31.93
CDY15873	Canola	cytosol	6.9	31.9
CDY15875	Canola	cytosol	12.6	31.35
CDX99574	Canola	cytosol	13.93	30.88
CDY15078	Canola	extracellular	10.74	28.62
GSMUA_Achr2P14860_001	Banana	cytosol, endoplasmic reticulum, plastid	13.13	26.54
EER97716	Sorghum	plastid	13.26	26.45
Zm00001d007152_P001	Maize	plastid	12.86	25.8
TraesCS2A01G111200.1	Wheat	cytosol, endoplasmic reticulum, plasma membrane	12.86	25.73
TraesCS2B01G130200.1	Wheat	cytosol, endoplasmic reticulum, plastid	12.6	25.2
Os07t0673700-01	Rice	cytosol	11.94	23.75
HORVU2Hr1G019280.1	Barley	cytosol	10.74	21.37
TraesCS2D01G111900.1	Wheat	nucleus	10.21	16.92

Protein Annotations

Gene3D:2.120.10.80	MapMan:35.1	EnsemblPlants:CDX72708	ProteinID:CDX72708	ProteinID:CDX72708.1	InterPro:F-box-like_dom_sf
InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00100301001	InterPro:IPR001810
InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	InterPro:Kelch_1	PFAM:PF00646	PFAM:PF01344	PANTHER:PTHR24414
PANTHER:PTHR24414:SF23	SMART:SM00256	SMART:SM00612	SUPFAM:SSF117281	SUPFAM:SSF81383	UniParc:UPI0004EDD362
SEG:seg	:	:	:	:	:

Description

BnaC07g47300D

Coordinates

chrLK031796:+:2761029..2764266

Molecular Weight (calculated)

85019.6 Da

IEP (calculated)

7.479

GRAVY (calculated)

-0.092

Length

754 amino acids

Sequence
(BLAST)

001: MHLLTVTSSS GSNAEKPPQK KKKVHGPRPL SLLLLPDELS LNCLARVPRC YHPSVSMVST ALRRLIASPA IYVERSLLRR TEHVLYVALR SCVTETPRWY
101: TLNLKPFGQA YGVNHSLVPV PSFPPVPSWG MSIFTVGSEI YVIGGCVNEK MVSTVFVIDC PSYTCRFLPN MKQARACAAA GIVGGKLYVI GGCKPRSSNW
201: VEAFDLKTQT WETVTGLNKV EMYEKMIRSF LIDDKIYLMD RKSSFVYDPK EGRLERDPLL NGQWSVGSCV IEDKLYSFGR RNTIWEFDTL GRVWRQVRGL
301: EDLPDKAEGS KMVNYGGKLV ILVNLQEHST EIWYTEIELE RREGGEVWGT ILLSTRVLAS EAFSPIVASL LRRRDLTTRA GWVMHLSSVT SSSGANADRK
401: LHDDNDAPSS LLLLPDEISL NCLARVPRCY YPWVSLVSTT LRRLIASPEI YTERSALRRT EHVLYVALRP YCTRTLEWYT LNLIKPSFGQ EEIKHRLVPV
501: PSFPLVPYWG MSIVVVGSEM YFLGGSVDES FVSTAFVIDC PSYTCRSLPN MKQERGCAAA GIVDGKLYVI GGCDPLSPNW VEAFDLKTQT WETVRGLSDV
601: EVYEKTIRSF VMDDKICIMD RDSSFVYDPK DGVLERDLLL NKQWRVGSCV IDDKLYSFDQ ENILWEFDPV SRVWTRVKGL EDLPGVRDVT KMANCGGKIA
701: ILCNVEKCST EIWYTEIGLE RREGGEAWGT ILWSGLVLAS EGFSTIVRSL SVSF

Best Arabidopsis Sequence Match ( AT4G39240.1 )
(BLAST)

001: MPFSAASSSS VSSIAEEPPP KKQHDPSPSC SSYLLLLPDE IILNCLARLP KCYYPVISLV SKTFRRLIAS PEIYVERSLL RRTERVLYVV LRSHATETPR
101: WYTLNFKPFG NDSNNHRLVP IPSFPSIPCW GMSIVAIDSE IYVLGGCIDN ELVSTGFVVE CPSHTCRLLP SMKQARGCAA VGFFDGKLYV IGGCNPLSVN
201: WVEAFDLKTQ TWESGLGVNN VEMHDLTIRS FAIDDKIYIM DRKNSFVYDP KEGTLETDEL LDTQWSVGSC VIDGKIYTFG SKNRIWVFDP IAMVWDRLKG
301: LDDLPDKRDG SRMSNLGGNL AIMFNLEKGS TKICCTEIRL ERREGGKIWG TVLWSNIVIT LKEPSTIVRC LTVTV

Arabidopsis Description

F-box/kelch-repeat protein At4g39240 [Source:UniProtKB/Swiss-Prot;Acc:Q9T031]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.