Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX99652 | Canola | cytosol, extracellular, nucleus | 53.67 | 40.25 |
| CDY15942 | Canola | cytosol | 55.93 | 26.9 |
| AT1G23770.1 | Thale cress | cytosol | 51.98 | 26.29 |
| CDY25801 | Canola | cytosol | 54.24 | 20.51 |
| CDY28475 | Canola | cytosol | 53.11 | 19.96 |
| AT1G23780.1 | Thale cress | cytosol | 51.41 | 19.16 |
| KRG91141 | Soybean | cytosol | 33.33 | 12.83 |
| PGSC0003DMT400054952 | Potato | cytosol | 35.59 | 12.55 |
| VIT_03s0088g00330.t01 | Wine grape | cytosol | 38.98 | 12.26 |
| KRH35641 | Soybean | cytosol | 31.64 | 12.07 |
| Solyc01g006990.2.1 | Tomato | cytosol, mitochondrion | 36.72 | 11.88 |
| GSMUA_Achr8P04990_001 | Banana | mitochondrion | 32.2 | 11.73 |
| GSMUA_Achr8P05000_001 | Banana | cytosol, mitochondrion | 33.9 | 11.7 |
| EER95223 | Sorghum | mitochondrion | 29.94 | 11.16 |
| Zm00001d028296_P001 | Maize | mitochondrion | 29.38 | 10.83 |
| Os03t0232000-01 | Rice | cytosol | 28.25 | 10.53 |
| TraesCS4A01G060300.1 | Wheat | cytosol | 29.38 | 10.4 |
| TraesCS4B01G235800.1 | Wheat | cytosol | 29.38 | 10.4 |
| TraesCS4D01G237200.1 | Wheat | cytosol | 29.38 | 10.34 |
| KRH75483 | Soybean | plastid | 7.91 | 5.07 |
Protein Annotations
| EnsemblPlants:CDX89734 | EnsemblPlantsGene:GSBRNA2T00150157001 | PANTHER:PTHR34791 | ProteinID:CDX89734 | ProteinID:CDX89734.1 | SEG:seg |
| UniParc:UPI0004EAF654 | MapMan:19.2.2.8.1.4.6 | : | : | : | : |
Description
BnaC03g46480D
Coordinates
chrLK031860:+:1273897..1274577
Molecular Weight (calculated)
20342.1 Da
IEP (calculated)
10.617
GRAVY (calculated)
-0.084
Length
177 amino acids
Sequence
(BLAST)
(BLAST)
001: MDLKEGNGSK RIRIRAVEQY NHGCSDRFSF SNELLSLSLR YTLPAITKDT KKMIEFVTLR FQSLSNTFVV YGSLSGHMVQ RVNRFVVPVV DLVMDTLKFV
101: KQASSSSYRE VFVFWRMSGL ELPPCLMRLP RELKLKILEF IANMACVSTE MRHLVASDDG LRKRRAWKKL LAATSTP
101: KQASSSSYRE VFVFWRMSGL ELPPCLMRLP RELKLKILEF IANMACVSTE MRHLVASDDG LRKRRAWKKL LAATSTP
001: MDTGFADSNN DSSPGEGSKR GNSGIEGPVP MDVELAAAKS KRLSEPFFLK NVLLEKSGDT SDLTALALSV HAVMLESGFV LLDHGSDKFS FSKKLLSVSL
101: RYTLPELITR KDTNTVESVT VRFQNIGPRL VVYGTLGGSC KRVHMTSLDK SRFLPVIDLV VDTLKFEKQG SSSYYREVFM LWRMVKDELV IPLLIGLCDK
201: AGLESPPCLM LLPTELKLKI LELLPGVSIG YMACVCTEMR YLASDNDLWE HKCLEEGKGC LWKLYTGDVD WKRKFASFWR RKRLDLLARR NPPIKKSNPR
301: FPTLFPDRRD RREPFDRFGP SDFYRFGLRD PRDRFGPRDP RDPHFYGFRY
101: RYTLPELITR KDTNTVESVT VRFQNIGPRL VVYGTLGGSC KRVHMTSLDK SRFLPVIDLV VDTLKFEKQG SSSYYREVFM LWRMVKDELV IPLLIGLCDK
201: AGLESPPCLM LLPTELKLKI LELLPGVSIG YMACVCTEMR YLASDNDLWE HKCLEEGKGC LWKLYTGDVD WKRKFASFWR RKRLDLLARR NPPIKKSNPR
301: FPTLFPDRRD RREPFDRFGP SDFYRFGLRD PRDRFGPRDP RDPHFYGFRY
Arabidopsis Description
Putative F-box protein At1g23770 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZUB9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.