Factsheet for GSMUA_Achr8P04990_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
cytosol 2
nucleus 1
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G23780.1	GSMUA_Achr10P...	AT2G42790.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P05000_001	Banana	cytosol, mitochondrion	75.31	71.34
AT1G70360.1	Thale cress	cytosol, peroxisome, plastid	13.58	34.2
Bra030346.1-P	Field mustard	cytosol	24.9	32.97
CDY15942	Canola	cytosol	24.9	32.88
CDX89734	Canola	nucleus	11.73	32.2
CDX99652	Canola	cytosol, extracellular, nucleus	15.43	31.78
KRG91141	Soybean	cytosol	28.81	30.43
KRH35641	Soybean	cytosol	28.19	29.53
VIT_03s0088g00330.t01	Wine grape	cytosol	32.92	28.42
CDY28475	Canola	cytosol	27.37	28.24
PGSC0003DMT400054952	Potato	cytosol	29.01	28.09
EER95223	Sorghum	mitochondrion	27.37	28.0
Os03t0232000-01	Rice	cytosol	27.37	28.0
Bra012387.1-P	Field mustard	cytosol	26.34	27.71
AT1G23780.1	Thale cress	cytosol	26.75	27.37
CDY25801	Canola	cytosol	26.34	27.35
AT1G23770.1	Thale cress	cytosol	19.55	27.14
TraesCS4A01G060300.1	Wheat	cytosol	27.57	26.8
TraesCS4B01G235800.1	Wheat	cytosol	27.37	26.6
TraesCS4D01G237200.1	Wheat	cytosol	27.37	26.44
Zm00001d028296_P001	Maize	mitochondrion	25.93	26.25
Solyc01g006990.2.1	Tomato	cytosol, mitochondrion	29.01	25.78
KRH75483	Soybean	plastid	12.55	22.1

Protein Annotations

Gene3D:1.20.1280.50	MapMan:19.2.2.8.1.4.6	Gene3D:3.40.1000.30	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSMUA_Achr8G04990_001	EnsemblPlants:GSMUA_Achr8P04990_001	EnsemblPlants:GSMUA_Achr8T04990_001	InterPro:IPR000626
InterPro:IPR001810	UniProt:M0TMQ2	PFAM:PF00646	PFscan:PS50053	PFscan:PS50181	PANTHER:PTHR15537
PANTHER:PTHR15537:SF2	SMART:SM00256	SUPFAM:SSF81383	UniParc:UPI0002958E88	InterPro:Ubiquitin_dom	SEG:seg

Description

Putative F-box protein SKIP22 [Source:GMGC_GENE;Acc:GSMUA_Achr8G04990_001]

Coordinates

chr8:+:3291884..3293432

Molecular Weight (calculated)

52840.7 Da

IEP (calculated)

6.441

GRAVY (calculated)

-0.001

Length

486 amino acids

Sequence
(BLAST)

001: MKLRIRSVAS KETLRIQAPD PSSLHDLKTL IARALSSSSS ISIPPGSIRL SLNRKDELLP PSPHDSLHSL GLTSGNLIFF YIVPASQTLA PSPSSAPAPE
101: ETVESSNLAP VPPPETPSAV DETPVRLHAQ TLNLLSSSVA TSMDIAESSN LAPVLTQDNP SAIASDLSAP QAEVVQQDDT LASDAEPVFV GKSLSVPYFL
201: KRVMEAEKGE AEGLLGRLVV TFHAAFLESG FVVSGGGSRL PTGRPSKAAT FSVQYTLPEL VGAVDTRDVK VAMLRFSMMG NYATVYGFLT GDHQDVYRVC
301: IDLSKLASLL SLSMDSLSEQ EEKEVFGLWK VVKDELTLPL LIDICRKNGL PSPTCFMRLP AELQLHILKH VSAIDLAKIG CTCSELRFLS SDDHLWKRRF
401: HVEIGSVNGR LITGRSWKEK YVKCRVRMME AEKMTERSNL LGSPSYFNSG LTQLVPRGFL CEAEITAGSL QSVVLVRRVC DLDVHV

Best Arabidopsis Sequence Match ( AT1G23780.1 )
(BLAST)

001: MKLRLRHHET RETLKLELAD ADTLHDLRRR INPTVPSSVH LSLNRKDELI TPSPEDTLRS LGLISGDLIY FSLEAGESSN WKLRDSETVA SQSESNQTSV
101: HDSIGFAEVD VVPDQAKSNP NTSVEDPEGD ISGMEGPEPM DVEQLDMELA AAGSKRLSEP FFLKNILLEK SGDTSELTTL ALSVHAVMLE SGFVLLNHGS
201: DKFNFSKELL TVSLRYTLPE LIKSKDTNTI ESVSVKFQNL GPVVVVYGTV GGSSGRVHMN LDKRRFVPVI DLVMDTSTSD EEGSSSIYRE VFMFWRMVKD
301: RLVIPLLIGI CDKAGLEPPP CLMRLPTELK LKILELLPGV SIGNMACVCT EMRYLASDND LWKQKCLEEV NNFVVTEAGD SVNWKARFAT FWRQKQLAAA
401: SDTFWRQNQL GRRNISTGRS GIRFPRIIGD PPFTWFNGDR MHGSIGIHPG QSARGLGRRT WGQLFTPRCN LGGLN

Arabidopsis Description

SKIP22F-box family protein [Source:UniProtKB/TrEMBL;Acc:C1PI94]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.