Factsheet for Bra012387.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY25801	Canola	cytosol	92.42	91.24
CDY28475	Canola	cytosol	83.77	82.17
Bra030346.1-P	Field mustard	cytosol	46.75	58.86
KRG91141	Soybean	cytosol	35.06	35.22
KRH35641	Soybean	cytosol	34.63	34.48
PGSC0003DMT400054952	Potato	cytosol	34.85	32.07
VIT_03s0088g00330.t01	Wine grape	cytosol	37.01	30.37
Solyc01g006990.2.1	Tomato	cytosol, mitochondrion	35.5	29.98
GSMUA_Achr8P05000_001	Banana	cytosol, mitochondrion	31.17	28.07
GSMUA_Achr8P04990_001	Banana	mitochondrion	27.71	26.34
Os03t0232000-01	Rice	cytosol	25.11	24.42
KRH75483	Soybean	plastid	14.5	24.28
TraesCS4A01G060300.1	Wheat	cytosol	25.54	23.6
TraesCS4D01G237200.1	Wheat	cytosol	25.54	23.46
TraesCS4B01G235800.1	Wheat	cytosol	25.32	23.4
EER95223	Sorghum	mitochondrion	23.59	22.95
Zm00001d028296_P001	Maize	mitochondrion	23.59	22.71

Protein Annotations

EnsemblPlants:Bra012387.1	EnsemblPlants:Bra012387.1-P	EnsemblPlantsGene:Bra012387	Gene3D:1.20.1280.50	Gene3D:3.40.1000.30	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	PANTHER:PTHR15537
PANTHER:PTHR15537:SF2	PFAM:PF12937	PFscan:PS50181	SEG:seg	SMART:SM00256	SUPFAM:SSF81383
UniParc:UPI00025413A1	UniProt:M4D7C7	MapMan:19.2.2.8.1.4.6	:	:	:

Description

AT1G23780 (E=2e-132) | F-box family protein

Coordinates

chrA07:+:8056767..8058155

Molecular Weight (calculated)

51259.9 Da

IEP (calculated)

7.552

GRAVY (calculated)

-0.252

Length

462 amino acids

Sequence
(BLAST)

001: MKLRLRRHET RETLKLELPD SITLHDLRQR INEPSPSSVH LSLNRKDELL APSPDHTLRS LGVTSGDLIY YSLVPSAFAA SLEEIALASS SEVKSQNEMG
101: IGFAASDVDM HIQDPGEASG HAPDPMDVEE LDVELAAAGS KRLTEPFFLK KVLLEKSGDT SELTTVAMSV HAVMLESGFV LFNPDCSDNK FSFSKELLTV
201: SLKYTLPELM TSDKGVESVT VRFQSLSDKV VVYGSLGGKL QRLYLDKRRF VPVIDLVMDT LKSDKDGSSS IYKEMFMFWR MVKDGLVIPL LIGLCDKSGL
301: ELPPCLMRLP TELKLKILES LPGASVAKMA CVCTEIRYLA TDNDLWKQKC LEEAKHLVVD GEGDSVNWKA KFAAFWRQYK RQVSSSRRTL RNFGMGRNRV
401: PPFPRIPDPD HFGWINGGGL PGPGPFIMLP GQPAGRLGGR RLGRSFSPRC NLGGNSYQQH GE

Best Arabidopsis Sequence Match ( AT1G23780.1 )
(BLAST)

001: MKLRLRHHET RETLKLELAD ADTLHDLRRR INPTVPSSVH LSLNRKDELI TPSPEDTLRS LGLISGDLIY FSLEAGESSN WKLRDSETVA SQSESNQTSV
101: HDSIGFAEVD VVPDQAKSNP NTSVEDPEGD ISGMEGPEPM DVEQLDMELA AAGSKRLSEP FFLKNILLEK SGDTSELTTL ALSVHAVMLE SGFVLLNHGS
201: DKFNFSKELL TVSLRYTLPE LIKSKDTNTI ESVSVKFQNL GPVVVVYGTV GGSSGRVHMN LDKRRFVPVI DLVMDTSTSD EEGSSSIYRE VFMFWRMVKD
301: RLVIPLLIGI CDKAGLEPPP CLMRLPTELK LKILELLPGV SIGNMACVCT EMRYLASDND LWKQKCLEEV NNFVVTEAGD SVNWKARFAT FWRQKQLAAA
401: SDTFWRQNQL GRRNISTGRS GIRFPRIIGD PPFTWFNGDR MHGSIGIHPG QSARGLGRRT WGQLFTPRCN LGGLN

Arabidopsis Description

SKIP22F-box family protein [Source:UniProtKB/TrEMBL;Acc:C1PI94]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.