Factsheet for VIT_03s0088g00330.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 2
nucleus 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_06s0080g00770.t01
VIT_12s0142g00610.t01
VIT_18s0001g14860.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G23780.1	VIT_06s0080g00770.t01	AT2G42790.1	21798944
AT1G23780.1	VIT_12s0142g00610.t01	AT2G42790.1	21798944
AT1G23780.1	VIT_18s0001g14860.t01	AT5G42190.1	12795696

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT1G70360.1	Thale cress	cytosol, peroxisome, plastid	15.63	45.6
KRH35641	Soybean	cytosol	35.88	43.53
KRG91141	Soybean	cytosol	34.64	42.39
CDX99652	Canola	cytosol, extracellular, nucleus	16.87	40.25
Bra030346.1-P	Field mustard	cytosol	25.93	39.78
CDY15942	Canola	cytosol	25.93	39.67
CDX89734	Canola	nucleus	12.26	38.98
AT1G23780.1	Thale cress	cytosol	31.62	37.47
CDY28475	Canola	cytosol	31.26	37.37
Bra012387.1-P	Field mustard	cytosol	30.37	37.01
PGSC0003DMT400054952	Potato	cytosol	32.86	36.85
AT1G23770.1	Thale cress	cytosol	22.74	36.57
CDY25801	Canola	cytosol	30.37	36.54
GSMUA_Achr8P05000_001	Banana	cytosol, mitochondrion	32.86	36.06
Solyc01g006990.2.1	Tomato	cytosol, mitochondrion	34.28	35.28
GSMUA_Achr8P04990_001	Banana	mitochondrion	28.42	32.92
KRH75483	Soybean	plastid	14.39	29.35
Os03t0232000-01	Rice	cytosol	22.74	26.95
EER95223	Sorghum	mitochondrion	21.31	25.26
TraesCS4B01G235800.1	Wheat	cytosol	22.2	25.0
TraesCS4A01G060300.1	Wheat	cytosol	22.02	24.8
TraesCS4D01G237200.1	Wheat	cytosol	22.02	24.65
Zm00001d028296_P001	Maize	mitochondrion	20.96	24.58

Protein Annotations

Gene3D:1.20.1280.50	EntrezGene:100246319	wikigene:100246319	MapMan:19.2.2.8.1.4.6	Gene3D:3.40.1000.30	UniProt:A5ALY1
EMBL:AM429797	ProteinID:CAN73524	ProteinID:CAN73524.1	ProteinID:CCB49637	ProteinID:CCB49637.1	InterPro:F-box-like_dom_sf
InterPro:F-box_dom	EMBL:FN595512	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001810
EntrezGene:LOC100246319	wikigene:LOC100246319	PFscan:PS50181	PANTHER:PTHR15537	PANTHER:PTHR15537:SF2	SMART:SM00256
SUPFAM:SSF81383	TIGR:TC61232	UniParc:UPI000151EF98	ArrayExpress:VIT_03s0088g00330	EnsemblPlantsGene:VIT_03s0088g00330	EnsemblPlants:VIT_03s0088g00330.t01
unigene:Vvi.845	RefSeq:XP_002276156	RefSeq:XP_002276156.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr3:+:8350297..8352177

Molecular Weight (calculated)

62520.3 Da

IEP (calculated)

5.105

GRAVY (calculated)

-0.303

Length

563 amino acids

Sequence
(BLAST)

001: MKLRVRSLES KETLKIQVPD PCSLQHFIHL LSLAISSSSS SSSSIIYLSL NRKDELQVSS SLDTLQSLGV TSGDLIFYSF NPTAFSRQTH APPIPETLVN
101: EGTPIPSQTL VPSQALGPNS GETLIQSQTL DPNSGEAQTL PMTKRVMEET PIPSETLVSN SERKETLLES QTLAPLAQAN PHEPKEYGSL VSDSKKNETQ
201: EFSGATSMDV EGGVAAADED DEPIVVKKSF SEPCFLRKVL REEVGDDGNE HKLLVIAVHA VMLESGFVGF DSVSGMRVDR FHLSEEYPFA AISMSLWYTL
301: PELLDHGCDD SPAIQSVALK FQHLGQFINI YGSLSGNRST VHWVSLDEYR FAPTLDLMWT HSDSAEEKDR GSSNSYPENE VFEFWKIVKD GLALPLLTDL
401: CEKGGLLPPP CLMRLPTELK LKILELLPGV DLGKVGCVCS ELMYLSSNND LWKQKFTEEF GNVRVGQGFS LWKDKFATWW ENRKKRKRVS GMCTWFPSLE
501: APSYFPIRRD PNPFAIPPTI GGDYDHFPAL GIPSPFGQPG RRYHRFLAPR NTIPRCNLGG FIG

Best Arabidopsis Sequence Match ( AT1G23780.1 )
(BLAST)

001: MKLRLRHHET RETLKLELAD ADTLHDLRRR INPTVPSSVH LSLNRKDELI TPSPEDTLRS LGLISGDLIY FSLEAGESSN WKLRDSETVA SQSESNQTSV
101: HDSIGFAEVD VVPDQAKSNP NTSVEDPEGD ISGMEGPEPM DVEQLDMELA AAGSKRLSEP FFLKNILLEK SGDTSELTTL ALSVHAVMLE SGFVLLNHGS
201: DKFNFSKELL TVSLRYTLPE LIKSKDTNTI ESVSVKFQNL GPVVVVYGTV GGSSGRVHMN LDKRRFVPVI DLVMDTSTSD EEGSSSIYRE VFMFWRMVKD
301: RLVIPLLIGI CDKAGLEPPP CLMRLPTELK LKILELLPGV SIGNMACVCT EMRYLASDND LWKQKCLEEV NNFVVTEAGD SVNWKARFAT FWRQKQLAAA
401: SDTFWRQNQL GRRNISTGRS GIRFPRIIGD PPFTWFNGDR MHGSIGIHPG QSARGLGRRT WGQLFTPRCN LGGLN

Arabidopsis Description

SKIP22F-box family protein [Source:UniProtKB/TrEMBL;Acc:C1PI94]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.