CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY25801	Canola	cytosol	88.32	88.89
Bra012387.1-P	Field mustard	cytosol	82.17	83.77
CDX99652	Canola	cytosol, extracellular, nucleus	29.51	58.9
CDY15942	Canola	cytosol	45.44	58.15
CDX89734	Canola	nucleus	19.96	53.11
KRG91141	Soybean	cytosol	33.76	34.57
KRH35641	Soybean	cytosol	33.76	34.27
PGSC0003DMT400054952	Potato	cytosol	33.76	31.67
VIT_03s0088g00330.t01	Wine grape	cytosol	37.37	31.26
Solyc01g006990.2.1	Tomato	cytosol, mitochondrion	33.97	29.25
GSMUA_Achr8P05000_001	Banana	cytosol, mitochondrion	31.0	28.46
GSMUA_Achr8P04990_001	Banana	mitochondrion	28.24	27.37
Os03t0232000-01	Rice	cytosol	24.42	24.21
KRH75483	Soybean	plastid	13.59	23.19
EER95223	Sorghum	mitochondrion	23.14	22.95
Zm00001d028296_P001	Maize	mitochondrion	22.93	22.5
TraesCS4A01G060300.1	Wheat	cytosol	23.35	22.0
TraesCS4D01G237200.1	Wheat	cytosol	23.35	21.87
TraesCS4B01G235800.1	Wheat	cytosol	23.14	21.8

Protein Annotations

EnsemblPlants:CDY28475	EnsemblPlantsGene:GSBRNA2T00040365001	Gene3D:1.20.1280.50	Gene3D:3.40.1000.30	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	PANTHER:PTHR15537	PANTHER:PTHR15537:SF2
PFAM:PF12937	PFscan:PS50181	ProteinID:CDY28475	ProteinID:CDY28475.1	SEG:seg	SMART:SM00256
SUPFAM:SSF81383	UniParc:UPI0004EEC17C	UniProt:A0A078GPJ1	MapMan:19.2.2.8.1.4.6	:	:

Description

BnaC07g13030DBnaC07g13030D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GPJ1]

Coordinates

chrLK032220:+:470031..471765

Molecular Weight (calculated)

51996.5 Da

IEP (calculated)

6.332

GRAVY (calculated)

-0.270

Length

471 amino acids

Sequence
(BLAST)

001: MKLRLRCHET RETLKLELPD SSTLHDLRQR INEPSPSSVH LSLNRKDELL APSPDDTLRS LGVTSGDLIY YSLVPSAFAA SVEEIALASS SEGKSQDKTI
101: VQDSMGIGFA ATDVDMNIQD PEEASTGEES GHAPDPMDVE ELAAAGSKRL TEPFFLKKIL LEKSGDTSEL TTVAMSVHAV MLESGFVLFN PVSSDNKFSF
201: SKELLTVSLK YTLPELMTRE DGVESVTVRF QSLSDKVVVY GSLGGKLQRV YLDKRRFVPV IDLVMDTLKS DKDGSSSIYK EMFMFWRMVK DGLVIPLLIG
301: LCDKSGLELP PCLMRLPTEL KLKILESLPG ASVAKMACVC TEIRYLATDN DLWKQKCLEE AKHLVVDGAG DSVNWKAKFA AFWRQYQRQV SSSRRTLRNF
401: GMGRNRLPPF PRIPDPDHFG WINGGSLPGP GPGPFIMHPG QPAGRLGGRR LGLGFSPRCN LGGNNWEQPG E

Best Arabidopsis Sequence Match ( AT1G23780.1 )
(BLAST)

001: MKLRLRHHET RETLKLELAD ADTLHDLRRR INPTVPSSVH LSLNRKDELI TPSPEDTLRS LGLISGDLIY FSLEAGESSN WKLRDSETVA SQSESNQTSV
101: HDSIGFAEVD VVPDQAKSNP NTSVEDPEGD ISGMEGPEPM DVEQLDMELA AAGSKRLSEP FFLKNILLEK SGDTSELTTL ALSVHAVMLE SGFVLLNHGS
201: DKFNFSKELL TVSLRYTLPE LIKSKDTNTI ESVSVKFQNL GPVVVVYGTV GGSSGRVHMN LDKRRFVPVI DLVMDTSTSD EEGSSSIYRE VFMFWRMVKD
301: RLVIPLLIGI CDKAGLEPPP CLMRLPTELK LKILELLPGV SIGNMACVCT EMRYLASDND LWKQKCLEEV NNFVVTEAGD SVNWKARFAT FWRQKQLAAA
401: SDTFWRQNQL GRRNISTGRS GIRFPRIIGD PPFTWFNGDR MHGSIGIHPG QSARGLGRRT WGQLFTPRCN LGGLN

Arabidopsis Description

SKIP22F-box family protein [Source:UniProtKB/TrEMBL;Acc:C1PI94]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.