Factsheet for TraesCS4A01G060300.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS5A01G413300.1
TraesCS5B01G416700.1
TraesCS5D01G422000.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G23780.1	TraesCS5A01G413300.1	AT2G42790.1	21798944
AT1G23780.1	TraesCS5B01G416700.1	AT2G42790.1	21798944
AT1G23780.1	TraesCS5D01G422000.1	AT2G42790.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G235800.1	Wheat	cytosol	95.2	95.2
TraesCS4D01G237200.1	Wheat	cytosol	94.2	93.64
Os03t0232000-01	Rice	cytosol	57.6	60.63
Zm00001d028296_P001	Maize	mitochondrion	52.4	54.58
EER95223	Sorghum	mitochondrion	51.4	54.11
CDX99652	Canola	cytosol, extracellular, nucleus	14.2	30.08
CDX89734	Canola	nucleus	10.4	29.38
AT1G70360.1	Thale cress	cytosol, peroxisome, plastid	11.0	28.5
GSMUA_Achr8P05000_001	Banana	cytosol, mitochondrion	29.2	28.46
CDY15942	Canola	cytosol	20.6	27.99
GSMUA_Achr8P04990_001	Banana	mitochondrion	26.8	27.57
Bra030346.1-P	Field mustard	cytosol	19.6	26.7
KRH35641	Soybean	cytosol	23.8	25.65
Bra012387.1-P	Field mustard	cytosol	23.6	25.54
CDY25801	Canola	cytosol	23.0	24.57
AT1G23780.1	Thale cress	cytosol	23.2	24.42
KRG91141	Soybean	cytosol	22.2	24.13
PGSC0003DMT400054952	Potato	cytosol	24.2	24.1
CDY28475	Canola	cytosol	22.0	23.35
AT1G23770.1	Thale cress	cytosol	15.6	22.29
VIT_03s0088g00330.t01	Wine grape	cytosol	24.8	22.02
Solyc01g006990.2.1	Tomato	cytosol, mitochondrion	22.2	20.29
KRH75483	Soybean	plastid	9.4	17.03
TraesCS4A01G060200.2	Wheat	extracellular, mitochondrion, nucleus, plastid, vacuole	7.4	10.85

Protein Annotations

EnsemblPlants:TraesCS4A01G060300.1	EnsemblPlantsGene:TraesCS4A01G060300	Gene3D:1.20.1280.50	Gene3D:3.40.1000.30	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	PANTHER:PTHR15537	PANTHER:PTHR15537:SF2
PFscan:PS50181	SEG:seg	SUPFAM:SSF81383	MapMan:19.2.2.8.1.4.6	:	:

Description

No Description!

Coordinates

chr4A:-:56509712..56511214

Molecular Weight (calculated)

53946.2 Da

IEP (calculated)

7.011

GRAVY (calculated)

-0.118

Length

500 amino acids

Sequence
(BLAST)

001: MKLRLRSMDA RGGVAETHRV QLPDTAVLAD VKSFLAAKLS AAQPVPAESV RLSLNRSQEL CSPDPSATLA ALGLASGDLL YFTLSAELLS QPPPPQTLPR
101: NPSPDTASIG QIASGSQSPG EAGGSSSPPQ NLHIQPVSSS LPQNLHIEPI SSPRPRALHV EPILPVASDP PDVVMAEAVH APKSLSSLVI GILKREMEAE
201: DAGCANGTVI HRLAVSLQAA LVDAGFLAEN PMGSRPRLLK DWASGAAATL TVKYTLPELV AMLPEGEEGK TVVLNCSLMP NFVMIYGCVP GACSEVRRLC
301: LELPKLAPLL YLDSNEVGAT EEKEILELWR VLKDELCLPL MISLCQLNGL RLPPCLMALP GDLKAKVLEF VPGVDLARVQ CACKELQDLA ADDNLWKMRL
401: ELEMSPSSKG SGWSGDWKQR FVAAWKVDNS RRHHKRPPSP RFSGYGWGIG TRNPLNFPVI GGDSDRLPFI NHNILGRSFG NQRRNISPNC NFEGHRQGFP

Best Arabidopsis Sequence Match ( AT1G23780.1 )
(BLAST)

001: MKLRLRHHET RETLKLELAD ADTLHDLRRR INPTVPSSVH LSLNRKDELI TPSPEDTLRS LGLISGDLIY FSLEAGESSN WKLRDSETVA SQSESNQTSV
101: HDSIGFAEVD VVPDQAKSNP NTSVEDPEGD ISGMEGPEPM DVEQLDMELA AAGSKRLSEP FFLKNILLEK SGDTSELTTL ALSVHAVMLE SGFVLLNHGS
201: DKFNFSKELL TVSLRYTLPE LIKSKDTNTI ESVSVKFQNL GPVVVVYGTV GGSSGRVHMN LDKRRFVPVI DLVMDTSTSD EEGSSSIYRE VFMFWRMVKD
301: RLVIPLLIGI CDKAGLEPPP CLMRLPTELK LKILELLPGV SIGNMACVCT EMRYLASDND LWKQKCLEEV NNFVVTEAGD SVNWKARFAT FWRQKQLAAA
401: SDTFWRQNQL GRRNISTGRS GIRFPRIIGD PPFTWFNGDR MHGSIGIHPG QSARGLGRRT WGQLFTPRCN LGGLN

Arabidopsis Description

SKIP22F-box family protein [Source:UniProtKB/TrEMBL;Acc:C1PI94]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.