CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 2
nucleus 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG98876
KRH14452
KRH46090
KRH73702

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G23780.1	KRG98876	AT2G42790.1	21798944
AT1G23780.1	KRH14452	AT2G42790.1	21798944
AT1G23780.1	KRH46090	AT2G42790.1	21798944
AT1G23780.1	KRH73702	AT2G42790.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH35641	Soybean	cytosol	88.7	87.93
KRH75483	Soybean	plastid	39.13	65.22
AT1G70360.1	Thale cress	cytosol, peroxisome, plastid	16.09	38.34
PGSC0003DMT400054952	Potato	cytosol	38.91	35.66
CDY25801	Canola	cytosol	35.87	35.26
Bra012387.1-P	Field mustard	cytosol	35.22	35.06
CDY15942	Canola	cytosol	27.83	34.78
CDX99652	Canola	cytosol, extracellular, nucleus	17.83	34.75
VIT_03s0088g00330.t01	Wine grape	cytosol	42.39	34.64
Bra030346.1-P	Field mustard	cytosol	27.61	34.6
CDY28475	Canola	cytosol	34.57	33.76
CDX89734	Canola	nucleus	12.83	33.33
AT1G23780.1	Thale cress	cytosol	33.91	32.84
Solyc01g006990.2.1	Tomato	cytosol, mitochondrion	38.04	31.99
AT1G23770.1	Thale cress	cytosol	23.04	30.29
GSMUA_Achr8P05000_001	Banana	cytosol, mitochondrion	33.7	30.21
GSMUA_Achr8P04990_001	Banana	mitochondrion	30.43	28.81
EER95223	Sorghum	mitochondrion	25.43	24.63
Os03t0232000-01	Rice	cytosol	24.57	23.79
Zm00001d028296_P001	Maize	mitochondrion	24.35	23.33
TraesCS4A01G060300.1	Wheat	cytosol	24.13	22.2
TraesCS4B01G235800.1	Wheat	cytosol	23.91	22.0
TraesCS4D01G237200.1	Wheat	cytosol	23.91	21.87

Protein Annotations

Gene3D:1.20.1280.50	EntrezGene:100778313	MapMan:19.2.2.8.1.4.6	Gene3D:3.40.1000.30	EMBL:ACUP02012663	InterPro:F-box-like_dom_sf
InterPro:F-box_dom	EnsemblPlantsGene:GLYMA_20G135900	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001810
UniProt:K7N3B2	EnsemblPlants:KRG91141	ProteinID:KRG91141	ProteinID:KRG91141.1	ProteinID:KRG91142.1	PFAM:PF00646
PFscan:PS50181	PANTHER:PTHR15537	PANTHER:PTHR15537:SF2	SMART:SM00256	SUPFAM:SSF81383	UniParc:UPI000233DEF7
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr20:+:37555901..37566494

Molecular Weight (calculated)

51438.0 Da

IEP (calculated)

6.037

GRAVY (calculated)

-0.145

Length

460 amino acids

Sequence
(BLAST)

001: MKLRLRSLES KETLKIEVPD SCSLLQLKDT VSRTISSSSS SLHLSLNRKD EIHAPSPEEP LHSLGVAAGD LIFYSLNPIA FTLETLLHKP ETASRDGPSI
101: QDSPETLASD SPSVPDAEKP PTLDAAELEP MEMIDGSDEM VVVGTNSEPF FVRRVLKEAL GNNVNDFKLL VFAVHGVVLE SGFVRIDKDC GMAVTGSHLL
201: DDSPPAFSSV ISLRYALPEI LANGASHSVN LKFQTLGHFV NVCGSLSDDV GSRLHFVCLD KRKYVRPLEL MLANSEAKGS VNDGEDILFG SEVFEMWKMV
301: KDRLALPLLI DLCEKAGFDL PPCFTRLPME LKLLILERLP GVDLAKVACT CSELRYLSTS NELWKKKYEE EFGKEGDRKG WLFKDLFAVS WETKKRWRAV
401: PFRRRGISRN IIFSPNHFRM PPVWGGEYGV QPVFGVPFPR YQLWRNIIPS RTLTLGDFNI

Best Arabidopsis Sequence Match ( AT1G23780.1 )
(BLAST)

001: MKLRLRHHET RETLKLELAD ADTLHDLRRR INPTVPSSVH LSLNRKDELI TPSPEDTLRS LGLISGDLIY FSLEAGESSN WKLRDSETVA SQSESNQTSV
101: HDSIGFAEVD VVPDQAKSNP NTSVEDPEGD ISGMEGPEPM DVEQLDMELA AAGSKRLSEP FFLKNILLEK SGDTSELTTL ALSVHAVMLE SGFVLLNHGS
201: DKFNFSKELL TVSLRYTLPE LIKSKDTNTI ESVSVKFQNL GPVVVVYGTV GGSSGRVHMN LDKRRFVPVI DLVMDTSTSD EEGSSSIYRE VFMFWRMVKD
301: RLVIPLLIGI CDKAGLEPPP CLMRLPTELK LKILELLPGV SIGNMACVCT EMRYLASDND LWKQKCLEEV NNFVVTEAGD SVNWKARFAT FWRQKQLAAA
401: SDTFWRQNQL GRRNISTGRS GIRFPRIIGD PPFTWFNGDR MHGSIGIHPG QSARGLGRRT WGQLFTPRCN LGGLN

Arabidopsis Description

SKIP22F-box family protein [Source:UniProtKB/TrEMBL;Acc:C1PI94]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.