Factsheet for Zm00001d028296_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 6
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	mitochondrion

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d016248_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G23780.1	Zm00001d016248_P001	AT2G42790.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER95223	Sorghum	mitochondrion	86.67	87.58
Os03t0232000-01	Rice	cytosol	55.42	56.0
TraesCS4A01G060300.1	Wheat	cytosol	54.58	52.4
TraesCS4B01G235800.1	Wheat	cytosol	54.38	52.2
TraesCS4D01G237200.1	Wheat	cytosol	54.38	51.89
CDX89734	Canola	nucleus	10.83	29.38
CDX99652	Canola	cytosol, extracellular, nucleus	13.96	28.39
GSMUA_Achr8P05000_001	Banana	cytosol, mitochondrion	29.38	27.49
CDY15942	Canola	cytosol	20.21	26.36
GSMUA_Achr8P04990_001	Banana	mitochondrion	26.25	25.93
AT1G70360.1	Thale cress	cytosol, peroxisome, plastid	10.42	25.91
KRH35641	Soybean	cytosol	24.79	25.65
Bra030346.1-P	Field mustard	cytosol	19.17	25.07
CDY25801	Canola	cytosol	23.75	24.36
KRG91141	Soybean	cytosol	23.33	24.35
PGSC0003DMT400054952	Potato	cytosol	25.0	23.9
Bra012387.1-P	Field mustard	cytosol	22.71	23.59
AT1G23770.1	Thale cress	cytosol	16.88	23.14
CDY28475	Canola	cytosol	22.5	22.93
AT1G23780.1	Thale cress	cytosol	22.29	22.53
VIT_03s0088g00330.t01	Wine grape	cytosol	24.58	20.96
Solyc01g006990.2.1	Tomato	cytosol, mitochondrion	23.54	20.66
KRH75483	Soybean	plastid	9.58	16.67
Zm00001d047999_P001	Maize	nucleus	4.17	7.97
Zm00001d028297_P001	Maize	nucleus	5.21	7.46

Protein Annotations

EnsemblPlants:Zm00001d028296_P001	EnsemblPlants:Zm00001d028296_T001	EnsemblPlantsGene:Zm00001d028296	Gene3D:1.20.1280.50	Gene3D:3.40.1000.30	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR000626	InterPro:IPR001810
InterPro:Ubiquitin_dom	PANTHER:PTHR15537	PANTHER:PTHR15537:SF2	PFscan:PS50053	PFscan:PS50181	ProteinID:ONL95379.1
SEG:seg	SUPFAM:SSF81383	UniParc:UPI000189CF4E	UniProt:A0A1D6JU82	MapMan:19.2.2.8.1.4.6	:

Description

F-box protein SKIP22

Coordinates

chr1:+:29508943..29510385

Molecular Weight (calculated)

51426.1 Da

IEP (calculated)

8.554

GRAVY (calculated)

-0.061

Length

480 amino acids

Sequence
(BLAST)

001: MKLRLRSMQA RGGSAAVETH RVDLPPTATL ADVKTLLASK LSAAQPVPAE SVRLSLNRSE ELVSPDPAAT LPSLGLASGD LVFFTLSPLT ALAPPAQALP
101: RNPSPSSGAA ASIAEAADRG KGSKQSGTGD FSSSSLAQAV VVSPSFPVAS GTRDVVMEEE AVDATKGWSS FVLRDLKREM DNVGAAEGTA AGRLVAALHA
201: ALLDAGFLTA KLTGSHLSLP QGWPSGALKP LTIKYTIPEL SSMVSVTEEG KVVVLNYSLM ANFVMVYGYV PGAQSEVCRL CLELPGLEPL LYLDGDQLNG
301: VHEKGVHDLW RVLKDEICLP LMISLCQLNG LRLPPCLMAL PADLKTKVLG FLPGVDLAKV ECTCKEMMNL ASDDSIWKKL VSKFENYGEG SRLAGKNAKA
401: IFVEAWQANK RRQKRPNPTF WNYGWGNSPY SRPLRLPLIG GDSDRLPFIG NHGSVGRHFG NQRRNISPNC ILDGHRHNFL

Best Arabidopsis Sequence Match ( AT1G23780.1 )
(BLAST)

001: MKLRLRHHET RETLKLELAD ADTLHDLRRR INPTVPSSVH LSLNRKDELI TPSPEDTLRS LGLISGDLIY FSLEAGESSN WKLRDSETVA SQSESNQTSV
101: HDSIGFAEVD VVPDQAKSNP NTSVEDPEGD ISGMEGPEPM DVEQLDMELA AAGSKRLSEP FFLKNILLEK SGDTSELTTL ALSVHAVMLE SGFVLLNHGS
201: DKFNFSKELL TVSLRYTLPE LIKSKDTNTI ESVSVKFQNL GPVVVVYGTV GGSSGRVHMN LDKRRFVPVI DLVMDTSTSD EEGSSSIYRE VFMFWRMVKD
301: RLVIPLLIGI CDKAGLEPPP CLMRLPTELK LKILELLPGV SIGNMACVCT EMRYLASDND LWKQKCLEEV NNFVVTEAGD SVNWKARFAT FWRQKQLAAA
401: SDTFWRQNQL GRRNISTGRS GIRFPRIIGD PPFTWFNGDR MHGSIGIHPG QSARGLGRRT WGQLFTPRCN LGGLN

Arabidopsis Description

SKIP22F-box family protein [Source:UniProtKB/TrEMBL;Acc:C1PI94]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.