CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX68112
CDX73212
CDX79848
CDX79851
CDX80590
CDX85931
CDX87650
CDY13521
CDY15651
CDY39073
CDY50821

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G23780.1	CDX68112	AT1G75950.1	12795696
AT1G23780.1	CDX73212	AT1G75950.1	12795696
AT1G23780.1	CDX80590	AT1G75950.1	12795696
AT1G23780.1	CDX85931	AT1G75950.1	12795696
AT1G23780.1	CDX87650	AT1G75950.1	12795696
AT1G23780.1	CDY13521	AT1G75950.1	12795696
AT1G23780.1	CDY39073	AT1G75950.1	12795696
AT1G23780.1	CDX79848	AT2G42790.1	21798944
AT1G23780.1	CDX79851	AT2G42790.1	21798944
AT1G23780.1	CDY15651	AT2G42790.1	21798944
AT1G23780.1	CDY50821	AT2G42790.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra030346.1-P	Field mustard	cytosol	95.11	95.37
CDX99652	Canola	cytosol, extracellular, nucleus	60.6	94.49
CDX89734	Canola	nucleus	26.9	55.93
AT1G23770.1	Thale cress	cytosol	43.48	45.71
CDY25801	Canola	cytosol	57.88	45.51
CDY28475	Canola	cytosol	58.15	45.44
AT1G23780.1	Thale cress	cytosol	54.62	42.32
KRG91141	Soybean	cytosol	34.78	27.83
KRH35641	Soybean	cytosol	34.51	27.37
VIT_03s0088g00330.t01	Wine grape	cytosol	39.67	25.93
GSMUA_Achr8P05000_001	Banana	cytosol, mitochondrion	34.78	24.95
GSMUA_Achr8P04990_001	Banana	mitochondrion	32.88	24.9
PGSC0003DMT400054952	Potato	cytosol	33.7	24.7
Solyc01g006990.2.1	Tomato	cytosol, mitochondrion	32.88	22.12
EER95223	Sorghum	mitochondrion	27.72	21.47
Os03t0232000-01	Rice	cytosol	27.72	21.47
TraesCS4A01G060300.1	Wheat	cytosol	27.99	20.6
TraesCS4B01G235800.1	Wheat	cytosol	27.99	20.6
TraesCS4D01G237200.1	Wheat	cytosol	27.99	20.48
Zm00001d028296_P001	Maize	mitochondrion	26.36	20.21
KRH75483	Soybean	plastid	14.13	18.84

Protein Annotations

EnsemblPlants:CDY15942	EnsemblPlantsGene:GSBRNA2T00090318001	Gene3D:1.20.1280.50	Gene3D:3.40.1000.30	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	PANTHER:PTHR15537	PANTHER:PTHR15537:SF2
PFscan:PS50181	ProteinID:CDY15942	ProteinID:CDY15942.1	SEG:seg	SUPFAM:SSF81383	UniParc:UPI0004EF0F97
UniProt:A0A078FSW0	MapMan:19.2.2.8.1.4.6	:	:	:	:

Description

BnaA04g11690DBnaA04g11690D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FSW0]

Coordinates

chrLK032059:-:651916..653022

Molecular Weight (calculated)

41897.2 Da

IEP (calculated)

9.957

GRAVY (calculated)

-0.190

Length

368 amino acids

Sequence
(BLAST)

001: MMKLRLRRYE TRETLEFELA DTSNLHDLCH RISSSTPSSV HFSLNRNDKP SPKDTLRSRG MTPGDLIYYY SLHPSSPINI EIVAPAGSKR LSVPFHLKKV
101: LLEKSGDESG LTILATSVHA VMLESGFLLL NNRGCFDKFT FSKDLLTVSL RYTLPELITK TRVEYVTVTF QSLSNTIVVY GSLGGRGCMV KRVSLNKNRF
201: VSVIDLVVDT LRFEKQASCS SYRDVFTFWK MVKDGLSIPL MTCLCEKYGL ELPPCLMFLP RELKMKILEL VPGDSVAKMA CVCAEMQCLA SDDGLWKHKC
301: LEEAKHLVVN RSSVSWKAEF AAFWKQRQKV RSDMEISRRS VTSPGIIAQS RADRISSLRA YRRQRRQR

Best Arabidopsis Sequence Match ( AT1G23770.1 )
(BLAST)

001: MDTGFADSNN DSSPGEGSKR GNSGIEGPVP MDVELAAAKS KRLSEPFFLK NVLLEKSGDT SDLTALALSV HAVMLESGFV LLDHGSDKFS FSKKLLSVSL
101: RYTLPELITR KDTNTVESVT VRFQNIGPRL VVYGTLGGSC KRVHMTSLDK SRFLPVIDLV VDTLKFEKQG SSSYYREVFM LWRMVKDELV IPLLIGLCDK
201: AGLESPPCLM LLPTELKLKI LELLPGVSIG YMACVCTEMR YLASDNDLWE HKCLEEGKGC LWKLYTGDVD WKRKFASFWR RKRLDLLARR NPPIKKSNPR
301: FPTLFPDRRD RREPFDRFGP SDFYRFGLRD PRDRFGPRDP RDPHFYGFRY

Arabidopsis Description

Putative F-box protein At1g23770 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZUB9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.