CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 2
mitochondrion 4
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EES04804

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G23780.1	EES04804	AT2G42790.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d028296_P001	Maize	mitochondrion	87.58	86.67
Os03t0232000-01	Rice	cytosol	55.79	55.79
TraesCS4A01G060300.1	Wheat	cytosol	54.11	51.4
TraesCS4B01G235800.1	Wheat	cytosol	53.89	51.2
TraesCS4D01G237200.1	Wheat	cytosol	53.05	50.1
CDX99652	Canola	cytosol, extracellular, nucleus	14.95	30.08
CDX89734	Canola	nucleus	11.16	29.94
GSMUA_Achr8P05000_001	Banana	cytosol, mitochondrion	30.95	28.66
AT1G70360.1	Thale cress	cytosol, peroxisome, plastid	11.37	27.98
CDY15942	Canola	cytosol	21.47	27.72
GSMUA_Achr8P04990_001	Banana	mitochondrion	28.0	27.37
KRH35641	Soybean	cytosol	26.32	26.94
Bra030346.1-P	Field mustard	cytosol	20.63	26.7
KRG91141	Soybean	cytosol	24.63	25.43
PGSC0003DMT400054952	Potato	cytosol	25.89	24.5
CDY25801	Canola	cytosol	24.0	24.36
AT1G23770.1	Thale cress	cytosol	17.47	23.71
Bra012387.1-P	Field mustard	cytosol	22.95	23.59
AT1G23780.1	Thale cress	cytosol	23.16	23.16
CDY28475	Canola	cytosol	22.95	23.14
VIT_03s0088g00330.t01	Wine grape	cytosol	25.26	21.31
Solyc01g006990.2.1	Tomato	cytosol, mitochondrion	24.42	21.21
KRH75483	Soybean	plastid	10.11	17.39
EER95218	Sorghum	nucleus	4.84	7.88

Protein Annotations

Gene3D:1.20.1280.50	MapMan:19.2.2.8.1.4.6	Gene3D:3.40.1000.30	EntrezGene:8085253	UniProt:C5WRR8	EnsemblPlants:EER95223
ProteinID:EER95223	ProteinID:EER95223.1	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR000626	InterPro:IPR001810	PFAM:PF12937	PFscan:PS50053	PFscan:PS50181
PANTHER:PTHR15537	PANTHER:PTHR15537:SF2	SMART:SM00256	EnsemblPlantsGene:SORBI_3001G447900	SUPFAM:SSF81383	UniParc:UPI0001A83310
InterPro:Ubiquitin_dom	RefSeq:XP_002468225.1	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr1:-:72523545..72525194

Molecular Weight (calculated)

50991.4 Da

IEP (calculated)

8.721

GRAVY (calculated)

-0.082

Length

475 amino acids

Sequence
(BLAST)

001: MKLRLRSMEA RGGAAAETHR VDLPPTATLA DVRTLLASKL SAAQPVPAES VRLSLNRSEE LVSPDPAATL PSLGLASGDL VFFTLSPLTA LAPPVQALPR
101: NPSPGSGTAA SIAEAVDRGK GSKQPVTGGS SSSSQVQAVV ANPSFPVASS GRPDVVMEEA FDATKGWSSF VLRDLKREMG NVGGAEGTAA GRLVAALHAA
201: LLDVGFLTTT LMGSHLSLPQ GWPSGALKPL TIRYTVPELS SMLSVTEEGK VVVLNYSLMG NFVMVYGYVH GAQSEVCRLC LELPGLESLL YLDSDQLSGV
301: HEKGVHDLWR VLKDEICLPL MISLCQLNGL RLPPCFMALP ADLKTKVLEF LPGVDLAKVE CTCKEMRNLA SDDSIWKKFV SYGESSRGAG KSAKAIFGEV
401: WQANKRRQKR PNPTFWNYGW GNSSYSRPLR LPLIGGDSDR FPFIGNPGSV GRHFGNQRRN MSPNCILDGH RHNFL

Best Arabidopsis Sequence Match ( AT1G23780.1 )
(BLAST)

001: MKLRLRHHET RETLKLELAD ADTLHDLRRR INPTVPSSVH LSLNRKDELI TPSPEDTLRS LGLISGDLIY FSLEAGESSN WKLRDSETVA SQSESNQTSV
101: HDSIGFAEVD VVPDQAKSNP NTSVEDPEGD ISGMEGPEPM DVEQLDMELA AAGSKRLSEP FFLKNILLEK SGDTSELTTL ALSVHAVMLE SGFVLLNHGS
201: DKFNFSKELL TVSLRYTLPE LIKSKDTNTI ESVSVKFQNL GPVVVVYGTV GGSSGRVHMN LDKRRFVPVI DLVMDTSTSD EEGSSSIYRE VFMFWRMVKD
301: RLVIPLLIGI CDKAGLEPPP CLMRLPTELK LKILELLPGV SIGNMACVCT EMRYLASDND LWKQKCLEEV NNFVVTEAGD SVNWKARFAT FWRQKQLAAA
401: SDTFWRQNQL GRRNISTGRS GIRFPRIIGD PPFTWFNGDR MHGSIGIHPG QSARGLGRRT WGQLFTPRCN LGGLN

Arabidopsis Description

SKIP22F-box family protein [Source:UniProtKB/TrEMBL;Acc:C1PI94]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.