CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 2
nucleus 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG98876
KRH14452
KRH46090
KRH73702

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G23780.1	KRG98876	AT2G42790.1	21798944
AT1G23780.1	KRH14452	AT2G42790.1	21798944
AT1G23780.1	KRH46090	AT2G42790.1	21798944
AT1G23780.1	KRH73702	AT2G42790.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG91141	Soybean	cytosol	87.93	88.7
KRH75483	Soybean	plastid	35.56	59.78
AT1G70360.1	Thale cress	cytosol, peroxisome, plastid	15.73	37.82
PGSC0003DMT400054952	Potato	cytosol	40.73	37.65
VIT_03s0088g00330.t01	Wine grape	cytosol	43.53	35.88
CDY25801	Canola	cytosol	35.13	34.83
Bra012387.1-P	Field mustard	cytosol	34.48	34.63
Bra030346.1-P	Field mustard	cytosol	27.37	34.6
CDY15942	Canola	cytosol	27.37	34.51
CDX99652	Canola	cytosol, extracellular, nucleus	17.46	34.32
CDY28475	Canola	cytosol	34.27	33.76
Solyc01g006990.2.1	Tomato	cytosol, mitochondrion	39.66	33.64
AT1G23780.1	Thale cress	cytosol	33.19	32.42
CDX89734	Canola	nucleus	12.07	31.64
AT1G23770.1	Thale cress	cytosol	22.84	30.29
GSMUA_Achr8P05000_001	Banana	cytosol, mitochondrion	33.41	30.21
GSMUA_Achr8P04990_001	Banana	mitochondrion	29.53	28.19
EER95223	Sorghum	mitochondrion	26.94	26.32
Os03t0232000-01	Rice	cytosol	26.51	25.89
Zm00001d028296_P001	Maize	mitochondrion	25.65	24.79
TraesCS4A01G060300.1	Wheat	cytosol	25.65	23.8
TraesCS4B01G235800.1	Wheat	cytosol	25.22	23.4
TraesCS4D01G237200.1	Wheat	cytosol	25.22	23.26

Protein Annotations

Gene3D:1.20.1280.50	EntrezGene:100796338	MapMan:19.2.2.8.1.4.6	Gene3D:3.40.1000.30	EMBL:ACUP02006696	InterPro:F-box-like_dom_sf
InterPro:F-box_dom	EnsemblPlantsGene:GLYMA_10G255600	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	UniProt:I1LEC5
InterPro:IPR001810	EnsemblPlants:KRH35641	ProteinID:KRH35641	ProteinID:KRH35641.1	ProteinID:KRH35642.1	PFAM:PF00646
PFscan:PS50181	PANTHER:PTHR15537	PANTHER:PTHR15537:SF2	SMART:SM00256	SUPFAM:SSF81383	UniParc:UPI000233CDAD
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr10:-:48241991..48245308

Molecular Weight (calculated)

51365.6 Da

IEP (calculated)

5.366

GRAVY (calculated)

-0.188

Length

464 amino acids

Sequence
(BLAST)

001: MKLRLRSLES KETLKIEVPD SCCSLQQLKD TVSHTISSSS SSSSSVHLSL NRKDEIHAPS PDEPLQSLGV AAGDLIFYSL NPTAFSLETL PHKPETAPLD
101: GPTIQDSPET LAGDAPSVPT AEKPPTLDSA EPEPAEMIDG SDGTVVVSTN SEPFFVRRVL KEALGNNVTD FKLLVFAVHG VVLESGFVRI DKDSRMAVSC
201: SDLLDDSPSA FSSVISLRYT LPEILANGAS HSVNLKFQTL GHFVNVCGSL SDDVRSMLHF VCLDTRKYVR PLESMLANSE TKGSLNDGED IVFGNEVFEM
301: WKMGKDRLAL PLLIDLCEKA GVDLPPCFMR LPMELKLLIL ERLPGVDLAK VACTCSELRY LSTSNELWKK KYEEEFGKEG DRKGWLFKDL FALSWETKKR
401: RQAVPFRRQG ISRNIIFSPN HFGMPPVWGG EYGVQPVFGV PFPRYQPRRN IIPPCTLTLG DFNI

Best Arabidopsis Sequence Match ( AT1G23780.1 )
(BLAST)

001: MKLRLRHHET RETLKLELAD ADTLHDLRRR INPTVPSSVH LSLNRKDELI TPSPEDTLRS LGLISGDLIY FSLEAGESSN WKLRDSETVA SQSESNQTSV
101: HDSIGFAEVD VVPDQAKSNP NTSVEDPEGD ISGMEGPEPM DVEQLDMELA AAGSKRLSEP FFLKNILLEK SGDTSELTTL ALSVHAVMLE SGFVLLNHGS
201: DKFNFSKELL TVSLRYTLPE LIKSKDTNTI ESVSVKFQNL GPVVVVYGTV GGSSGRVHMN LDKRRFVPVI DLVMDTSTSD EEGSSSIYRE VFMFWRMVKD
301: RLVIPLLIGI CDKAGLEPPP CLMRLPTELK LKILELLPGV SIGNMACVCT EMRYLASDND LWKQKCLEEV NNFVVTEAGD SVNWKARFAT FWRQKQLAAA
401: SDTFWRQNQL GRRNISTGRS GIRFPRIIGD PPFTWFNGDR MHGSIGIHPG QSARGLGRRT WGQLFTPRCN LGGLN

Arabidopsis Description

SKIP22F-box family protein [Source:UniProtKB/TrEMBL;Acc:C1PI94]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.