Factsheet for Bra030346.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra003735.1-P
Bra004720.1-P
Bra008231.1-P
Bra015801.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G23780.1	Bra003735.1-P	AT1G75950.1	12795696
AT1G23780.1	Bra008231.1-P	AT1G75950.1	12795696
AT1G23780.1	Bra015801.1-P	AT1G75950.1	12795696
AT1G23780.1	Bra004720.1-P	AT2G42790.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY15942	Canola	cytosol	95.37	95.11
CDX99652	Canola	cytosol, extracellular, nucleus	59.95	93.22
Bra012387.1-P	Field mustard	cytosol	58.86	46.75
AT1G23770.1	Thale cress	cytosol	43.87	46.0
AT1G23780.1	Thale cress	cytosol	55.31	42.74
KRG91141	Soybean	cytosol	34.6	27.61
KRH35641	Soybean	cytosol	34.6	27.37
VIT_03s0088g00330.t01	Wine grape	cytosol	39.78	25.93
GSMUA_Achr8P05000_001	Banana	cytosol, mitochondrion	35.15	25.15
GSMUA_Achr8P04990_001	Banana	mitochondrion	32.97	24.9
PGSC0003DMT400054952	Potato	cytosol	33.24	24.3
Solyc01g006990.2.1	Tomato	cytosol, mitochondrion	32.43	21.75
Os03t0232000-01	Rice	cytosol	26.98	20.84
EER95223	Sorghum	mitochondrion	26.7	20.63
TraesCS4A01G060300.1	Wheat	cytosol	26.7	19.6
TraesCS4B01G235800.1	Wheat	cytosol	26.7	19.6
TraesCS4D01G237200.1	Wheat	cytosol	26.7	19.48
Zm00001d028296_P001	Maize	mitochondrion	25.07	19.17
KRH75483	Soybean	plastid	13.9	18.48

Protein Annotations

EnsemblPlants:Bra030346.1	EnsemblPlants:Bra030346.1-P	EnsemblPlantsGene:Bra030346	Gene3D:1.20.1280.50	Gene3D:3.40.1000.30	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	PANTHER:PTHR15537
PANTHER:PTHR15537:SF2	PFscan:PS50181	SEG:seg	SUPFAM:SSF81383	UniParc:UPI0002543A56	UniProt:M4ENH6
MapMan:19.2.2.8.1.4.6	:	:	:	:	:

Description

AT1G23780 (E=5e-081) | F-box family protein

Coordinates

chrA04:+:8968418..8969521

Molecular Weight (calculated)

41794.0 Da

IEP (calculated)

10.031

GRAVY (calculated)

-0.214

Length

367 amino acids

Sequence
(BLAST)

001: MKLRLRRYET RETLEFELAD TSNLHDLCHR ISSSTPSSVH FSLNRNDKPS PKDTLRSRGM TPSDLIYYYS QHPSSPINIE IVASAGSKRL SVPFLLKKVL
101: LEKSGDESGL TILATSVHAV MLESGFMLLN NRGCFDKFSF SKDLLTVSLR YTLPELITKT RVEYVTVTFQ NLSNTIVVYG SLGGRGCMVK RVSLNKNRFV
201: SVIDLVVDTL RFEKQASCSS YRDMFTFWKM VKDGLSIPLL TCLCEKYGLE LPACLMQLPT ELKMKILELV PGDSVAKMAC ICAEMRCLAS DNGLWKQKCL
301: EEAKHLVVNR SSVSWKAEFA AFWKQRQKVR SDMEISRRSV TSHGIIAQSR ADRISSLRAY RRQRRQR

Best Arabidopsis Sequence Match ( AT1G23770.1 )
(BLAST)

001: MDTGFADSNN DSSPGEGSKR GNSGIEGPVP MDVELAAAKS KRLSEPFFLK NVLLEKSGDT SDLTALALSV HAVMLESGFV LLDHGSDKFS FSKKLLSVSL
101: RYTLPELITR KDTNTVESVT VRFQNIGPRL VVYGTLGGSC KRVHMTSLDK SRFLPVIDLV VDTLKFEKQG SSSYYREVFM LWRMVKDELV IPLLIGLCDK
201: AGLESPPCLM LLPTELKLKI LELLPGVSIG YMACVCTEMR YLASDNDLWE HKCLEEGKGC LWKLYTGDVD WKRKFASFWR RKRLDLLARR NPPIKKSNPR
301: FPTLFPDRRD RREPFDRFGP SDFYRFGLRD PRDRFGPRDP RDPHFYGFRY

Arabidopsis Description

Putative F-box protein At1g23770 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZUB9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.