Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 2
- nucleus 1
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr10P... |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G23780.1 | GSMUA_Achr10P... | AT2G42790.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr8P04990_001 | Banana | mitochondrion | 71.34 | 75.31 |
| AT1G70360.1 | Thale cress | cytosol, peroxisome, plastid | 13.45 | 35.75 |
| CDX99652 | Canola | cytosol, extracellular, nucleus | 16.37 | 35.59 |
| Bra030346.1-P | Field mustard | cytosol | 25.15 | 35.15 |
| CDY15942 | Canola | cytosol | 24.95 | 34.78 |
| CDX89734 | Canola | nucleus | 11.7 | 33.9 |
| KRG91141 | Soybean | cytosol | 30.21 | 33.7 |
| KRH35641 | Soybean | cytosol | 30.21 | 33.41 |
| VIT_03s0088g00330.t01 | Wine grape | cytosol | 36.06 | 32.86 |
| PGSC0003DMT400054952 | Potato | cytosol | 31.38 | 32.07 |
| Bra012387.1-P | Field mustard | cytosol | 28.07 | 31.17 |
| CDY28475 | Canola | cytosol | 28.46 | 31.0 |
| EER95223 | Sorghum | mitochondrion | 28.66 | 30.95 |
| Os03t0232000-01 | Rice | cytosol | 28.46 | 30.74 |
| CDY25801 | Canola | cytosol | 27.88 | 30.56 |
| AT1G23770.1 | Thale cress | cytosol | 20.08 | 29.43 |
| Zm00001d028296_P001 | Maize | mitochondrion | 27.49 | 29.38 |
| TraesCS4A01G060300.1 | Wheat | cytosol | 28.46 | 29.2 |
| Solyc01g006990.2.1 | Tomato | cytosol, mitochondrion | 30.99 | 29.07 |
| AT1G23780.1 | Thale cress | cytosol | 26.9 | 29.05 |
| TraesCS4B01G235800.1 | Wheat | cytosol | 28.27 | 29.0 |
| TraesCS4D01G237200.1 | Wheat | cytosol | 28.27 | 28.83 |
| KRH75483 | Soybean | plastid | 11.5 | 21.38 |
Protein Annotations
| Gene3D:1.20.1280.50 | MapMan:19.2.2.8.1.4.6 | Gene3D:3.40.1000.30 | InterPro:F-box-like_dom_sf | InterPro:F-box_dom | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | EnsemblPlantsGene:GSMUA_Achr8G05000_001 | EnsemblPlants:GSMUA_Achr8P05000_001 | EnsemblPlants:GSMUA_Achr8T05000_001 | InterPro:IPR000626 |
| InterPro:IPR001810 | UniProt:M0TMQ3 | PFAM:PF00646 | PFscan:PS50053 | PFscan:PS50181 | PANTHER:PTHR15537 |
| PANTHER:PTHR15537:SF2 | SMART:SM00256 | SUPFAM:SSF81383 | UniParc:UPI000296BE58 | InterPro:Ubiquitin_dom | SEG:seg |
Description
Putative F-box protein SKIP22 [Source:GMGC_GENE;Acc:GSMUA_Achr8G05000_001]
Coordinates
chr8:+:3303114..3304655
Molecular Weight (calculated)
55229.4 Da
IEP (calculated)
6.895
GRAVY (calculated)
-0.003
Length
513 amino acids
Sequence
(BLAST)
(BLAST)
001: MKLRIRSVAS KETLRIQAPD PSSLHDLKTL IALALSSSSS ISIPPGSIRL SLNRKDELLP SSPQDSLHSL GLTAGDLIFF SIVPDSQTLA PSPSSAPAPE
101: ETVESSNLAP VPPPETPSAV DDTPFGLSAQ TLNFSSSSVA ASVEIAESSN LSPVSTQNNP SAIASDLTSP QAEVVQQDDV MALDVEPVVV GKSLAVPCFL
201: KRVIEAEKGE AEGLLGRLVI TFHAAFLESG FVVSGGGGGR GSRFPGGCPS KAATFSVRYT LPELVGAVDG RAVKVAILRF SMMGNYATVY GFLNGDHQDV
301: YRVCIDLSKL APLLSLSMDS LSKQEEKEVF GLWKVVKDGL TLPLLIDICR KNGLPSPTCF MRLPTDLKIK ILEFVSGIDV AKIGCTCSEL RYLSSNDDLW
401: KLRFLEEFGS VNERVLVGRS WKDKYVNYWV RRKEAEKMIT ERANLFRRPS VILRRFNPAG TLRLPVQGGD YDRFPAIGGF APGVLGLGVP RLPARRNFSP
501: DCNLGGNDAG FFA
101: ETVESSNLAP VPPPETPSAV DDTPFGLSAQ TLNFSSSSVA ASVEIAESSN LSPVSTQNNP SAIASDLTSP QAEVVQQDDV MALDVEPVVV GKSLAVPCFL
201: KRVIEAEKGE AEGLLGRLVI TFHAAFLESG FVVSGGGGGR GSRFPGGCPS KAATFSVRYT LPELVGAVDG RAVKVAILRF SMMGNYATVY GFLNGDHQDV
301: YRVCIDLSKL APLLSLSMDS LSKQEEKEVF GLWKVVKDGL TLPLLIDICR KNGLPSPTCF MRLPTDLKIK ILEFVSGIDV AKIGCTCSEL RYLSSNDDLW
401: KLRFLEEFGS VNERVLVGRS WKDKYVNYWV RRKEAEKMIT ERANLFRRPS VILRRFNPAG TLRLPVQGGD YDRFPAIGGF APGVLGLGVP RLPARRNFSP
501: DCNLGGNDAG FFA
001: MKLRLRHHET RETLKLELAD ADTLHDLRRR INPTVPSSVH LSLNRKDELI TPSPEDTLRS LGLISGDLIY FSLEAGESSN WKLRDSETVA SQSESNQTSV
101: HDSIGFAEVD VVPDQAKSNP NTSVEDPEGD ISGMEGPEPM DVEQLDMELA AAGSKRLSEP FFLKNILLEK SGDTSELTTL ALSVHAVMLE SGFVLLNHGS
201: DKFNFSKELL TVSLRYTLPE LIKSKDTNTI ESVSVKFQNL GPVVVVYGTV GGSSGRVHMN LDKRRFVPVI DLVMDTSTSD EEGSSSIYRE VFMFWRMVKD
301: RLVIPLLIGI CDKAGLEPPP CLMRLPTELK LKILELLPGV SIGNMACVCT EMRYLASDND LWKQKCLEEV NNFVVTEAGD SVNWKARFAT FWRQKQLAAA
401: SDTFWRQNQL GRRNISTGRS GIRFPRIIGD PPFTWFNGDR MHGSIGIHPG QSARGLGRRT WGQLFTPRCN LGGLN
101: HDSIGFAEVD VVPDQAKSNP NTSVEDPEGD ISGMEGPEPM DVEQLDMELA AAGSKRLSEP FFLKNILLEK SGDTSELTTL ALSVHAVMLE SGFVLLNHGS
201: DKFNFSKELL TVSLRYTLPE LIKSKDTNTI ESVSVKFQNL GPVVVVYGTV GGSSGRVHMN LDKRRFVPVI DLVMDTSTSD EEGSSSIYRE VFMFWRMVKD
301: RLVIPLLIGI CDKAGLEPPP CLMRLPTELK LKILELLPGV SIGNMACVCT EMRYLASDND LWKQKCLEEV NNFVVTEAGD SVNWKARFAT FWRQKQLAAA
401: SDTFWRQNQL GRRNISTGRS GIRFPRIIGD PPFTWFNGDR MHGSIGIHPG QSARGLGRRT WGQLFTPRCN LGGLN
Arabidopsis Description
SKIP22F-box family protein [Source:UniProtKB/TrEMBL;Acc:C1PI94]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.