Factsheet for PGSC0003DMT400054952

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400020128
PGSC0003DMT400044692

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G23780.1	PGSC0003DMT400020128	AT2G42790.1	21798944
AT1G23780.1	PGSC0003DMT400044692	AT2G42790.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g006990.2.1	Tomato	cytosol, mitochondrion	87.85	80.62
KRH35641	Soybean	cytosol	37.65	40.73
AT1G70360.1	Thale cress	cytosol, peroxisome, plastid	15.14	39.38
KRG91141	Soybean	cytosol	35.66	38.91
CDX89734	Canola	nucleus	12.55	35.59
Bra012387.1-P	Field mustard	cytosol	32.07	34.85
CDX99652	Canola	cytosol, extracellular, nucleus	15.94	33.9
CDY28475	Canola	cytosol	31.67	33.76
CDY15942	Canola	cytosol	24.7	33.7
CDY25801	Canola	cytosol	31.08	33.33
Bra030346.1-P	Field mustard	cytosol	24.3	33.24
VIT_03s0088g00330.t01	Wine grape	cytosol	36.85	32.86
AT1G23780.1	Thale cress	cytosol	30.48	32.21
GSMUA_Achr8P05000_001	Banana	cytosol, mitochondrion	32.07	31.38
AT1G23770.1	Thale cress	cytosol	21.51	30.86
GSMUA_Achr8P04990_001	Banana	mitochondrion	28.09	29.01
KRH75483	Soybean	plastid	14.74	26.81
EER95223	Sorghum	mitochondrion	24.5	25.89
Os03t0232000-01	Rice	cytosol	23.71	25.05
Zm00001d028296_P001	Maize	mitochondrion	23.9	25.0
TraesCS4A01G060300.1	Wheat	cytosol	24.1	24.2
TraesCS4B01G235800.1	Wheat	cytosol	23.9	24.0
TraesCS4D01G237200.1	Wheat	cytosol	23.9	23.86

Protein Annotations

Gene3D:1.20.1280.50	EntrezGene:102601599	MapMan:19.2.2.8.1.4.6	Gene3D:3.10.20.90	Gene3D:3.40.1000.30	InterPro:F-box-like_dom_sf
InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001810	UniProt:M1BX44
InterPro:Npl4_Ub-like_dom	PFAM:PF00646	PFAM:PF11543	EnsemblPlantsGene:PGSC0003DMG400021329	PGSC:PGSC0003DMG400021329	EnsemblPlants:PGSC0003DMT400054952
PFscan:PS50181	PANTHER:PTHR15537	PANTHER:PTHR15537:SF2	SMART:SM00256	SUPFAM:SSF54236	SUPFAM:SSF81383
UniParc:UPI000296C95C	InterPro:Ubiquitin-like_domsf	RefSeq:XP_006348453.1	SEG:seg	:	:

Description

Helix-loop-helix DNA-binding domain containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400021329]

Coordinates

chr1:-:2865723..2867672

Molecular Weight (calculated)

56401.2 Da

IEP (calculated)

6.353

GRAVY (calculated)

-0.342

Length

502 amino acids

Sequence
(BLAST)

001: MKLRIRCFET KETIKIDVQS SSCTLQELKN RISQALPSSS TPNSVHLSLN RKDELQSSEE DTLQSIGITS GDLIFFTQNP IGFSISTETH IPKLKKSDTQ
101: IVQESEIVKK LDTQIVQESE TVKEMDTQID QSEPHETKTQ NSIPGGEEME EFMEVDDNGD YSDVNFTKSF SVPGFLRKVF TEELNDDDGS RDHKLLVVAV
201: HAVFVESGFV LLDPITFTEV SVSQFLKYWS SGSRKTLFYT LPEVIDHVKG GNCNVIHCIE LKYQSLGKFF IAHGSLSGGG SVSTFRVTLN EDQLVPFLNV
301: VWANCGLNEV VDGDFGEKEV FVFWRNVKDG LVLPLLIDLC EKSGLVLPPC FTRLPTDLKL KILESLPGVE IAKVSCLSSE LRYLGSSDDL WKKKYAGQFG
401: DGAISGEGGH WKEKFVKSWE SRKRRKVINR RRVVDGLRIL GGRHPFPVPW MPHVIGGDYD LFPPQFDNTG NPLGRAPPSR LLHPWSNHVR RCHLGGHRSN
501: FP

Best Arabidopsis Sequence Match ( AT1G23780.1 )
(BLAST)

001: MKLRLRHHET RETLKLELAD ADTLHDLRRR INPTVPSSVH LSLNRKDELI TPSPEDTLRS LGLISGDLIY FSLEAGESSN WKLRDSETVA SQSESNQTSV
101: HDSIGFAEVD VVPDQAKSNP NTSVEDPEGD ISGMEGPEPM DVEQLDMELA AAGSKRLSEP FFLKNILLEK SGDTSELTTL ALSVHAVMLE SGFVLLNHGS
201: DKFNFSKELL TVSLRYTLPE LIKSKDTNTI ESVSVKFQNL GPVVVVYGTV GGSSGRVHMN LDKRRFVPVI DLVMDTSTSD EEGSSSIYRE VFMFWRMVKD
301: RLVIPLLIGI CDKAGLEPPP CLMRLPTELK LKILELLPGV SIGNMACVCT EMRYLASDND LWKQKCLEEV NNFVVTEAGD SVNWKARFAT FWRQKQLAAA
401: SDTFWRQNQL GRRNISTGRS GIRFPRIIGD PPFTWFNGDR MHGSIGIHPG QSARGLGRRT WGQLFTPRCN LGGLN

Arabidopsis Description

SKIP22F-box family protein [Source:UniProtKB/TrEMBL;Acc:C1PI94]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.