Factsheet for AT1G23780.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra030346.1-P	Field mustard	cytosol	42.74	55.31
AT1G23770.1	Thale cress	cytosol	40.42	54.86
CDY15942	Canola	cytosol	42.32	54.62
CDX99652	Canola	cytosol, extracellular, nucleus	26.95	54.24
AT1G70360.1	Thale cress	cytosol, peroxisome, plastid	21.47	52.85
CDX89734	Canola	nucleus	19.16	51.41
KRG91141	Soybean	cytosol	32.84	33.91
KRH35641	Soybean	cytosol	32.42	33.19
VIT_03s0088g00330.t01	Wine grape	cytosol	37.47	31.62
PGSC0003DMT400054952	Potato	cytosol	32.21	30.48
Solyc01g006990.2.1	Tomato	cytosol, mitochondrion	31.58	27.42
GSMUA_Achr8P05000_001	Banana	cytosol, mitochondrion	29.05	26.9
GSMUA_Achr8P04990_001	Banana	mitochondrion	27.37	26.75
Os03t0232000-01	Rice	cytosol	25.47	25.47
TraesCS4A01G060300.1	Wheat	cytosol	24.42	23.2
TraesCS4B01G235800.1	Wheat	cytosol	24.42	23.2
EER95223	Sorghum	mitochondrion	23.16	23.16
TraesCS4D01G237200.1	Wheat	cytosol	24.42	23.06
Zm00001d028296_P001	Maize	mitochondrion	22.53	22.29
KRH75483	Soybean	plastid	12.84	22.1

Protein Annotations

Gene3D:1.20.1280.50	MapMan:19.2.2.8.1.4.6	Gene3D:3.40.1000.30	EntrezGene:838989	UniProt:A0A178WH29	ProteinID:AAC98033.1
ProteinID:AEE30431.1	EMBL:AK317590	ArrayExpress:AT1G23780	EnsemblPlantsGene:AT1G23780	RefSeq:AT1G23780	TAIR:AT1G23780
RefSeq:AT1G23780-TAIR-G	EnsemblPlants:AT1G23780.1	TAIR:AT1G23780.1	EMBL:AY049291	EMBL:AY149929	Unigene:At.10947
ProteinID:BAH57636.1	ProteinID:BAH57638.1	ProteinID:BAH57643.1	ProteinID:BAH57644.1	ProteinID:BAH57645.1	UniProt:C1PI94
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016567	GO:GO:0019538	InterPro:IPR001810	RefSeq:NP_564203.1	ProteinID:OAP16773.1
PFAM:PF12937	PO:PO:0000013	PO:PO:0000037	PO:PO:0000230	PO:PO:0000293	PO:PO:0001054
PO:PO:0001078	PO:PO:0001081	PO:PO:0001185	PO:PO:0004507	PO:PO:0007064	PO:PO:0007095
PO:PO:0007098	PO:PO:0007103	PO:PO:0007115	PO:PO:0007123	PO:PO:0007611	PO:PO:0007616
PO:PO:0008019	PO:PO:0009005	PO:PO:0009006	PO:PO:0009009	PO:PO:0009010	PO:PO:0009025
PO:PO:0009029	PO:PO:0009030	PO:PO:0009031	PO:PO:0009032	PO:PO:0009046	PO:PO:0009047
PO:PO:0009052	PO:PO:0020030	PO:PO:0020038	PO:PO:0020100	PO:PO:0020137	PO:PO:0025022
PO:PO:0025281	PFscan:PS50181	PANTHER:PTHR15537	PANTHER:PTHR15537:SF2	UniProt:Q9ZUB8	SMART:SM00256
SUPFAM:SSF81383	UniParc:UPI00000AC5B6	SEG:seg	:	:	:

Description

SKIP22F-box family protein [Source:UniProtKB/TrEMBL;Acc:C1PI94]

Coordinates

chr1:-:8406663..8408530

Molecular Weight (calculated)

52950.3 Da

IEP (calculated)

6.038

GRAVY (calculated)

-0.291

Length

475 amino acids

Sequence
(BLAST)

001: MKLRLRHHET RETLKLELAD ADTLHDLRRR INPTVPSSVH LSLNRKDELI TPSPEDTLRS LGLISGDLIY FSLEAGESSN WKLRDSETVA SQSESNQTSV
101: HDSIGFAEVD VVPDQAKSNP NTSVEDPEGD ISGMEGPEPM DVEQLDMELA AAGSKRLSEP FFLKNILLEK SGDTSELTTL ALSVHAVMLE SGFVLLNHGS
201: DKFNFSKELL TVSLRYTLPE LIKSKDTNTI ESVSVKFQNL GPVVVVYGTV GGSSGRVHMN LDKRRFVPVI DLVMDTSTSD EEGSSSIYRE VFMFWRMVKD
301: RLVIPLLIGI CDKAGLEPPP CLMRLPTELK LKILELLPGV SIGNMACVCT EMRYLASDND LWKQKCLEEV NNFVVTEAGD SVNWKARFAT FWRQKQLAAA
401: SDTFWRQNQL GRRNISTGRS GIRFPRIIGD PPFTWFNGDR MHGSIGIHPG QSARGLGRRT WGQLFTPRCN LGGLN

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.