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Thale cress
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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: peroxisome, plastid, cytosol

Predictor Summary:
  • cytosol 1
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 1
  • golgi 1
  • plastid 1
  • peroxisome 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, peroxisome, plastid
Any Predictor:cytosol, peroxisome, plastid
MultiLoc:cytosol
PProwler:secretory
WoLF PSORT:plastid
YLoc:peroxisome
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
AT1G23770.1 Thale cress cytosol 52.33 28.86
AT1G23780.1 Thale cress cytosol 52.85 21.47
KRG91141 Soybean cytosol 38.34 16.09
KRH35641 Soybean cytosol 37.82 15.73
VIT_03s0088g00330.t01 Wine grape cytosol 45.6 15.63
PGSC0003DMT400054952 Potato cytosol 39.38 15.14
Solyc01g006990.2.1 Tomato cytosol, mitochondrion 39.38 13.89
GSMUA_Achr8P04990_001 Banana mitochondrion 34.2 13.58
GSMUA_Achr8P05000_001 Banana cytosol, mitochondrion 35.75 13.45
EER95223 Sorghum mitochondrion 27.98 11.37
Os03t0232000-01 Rice cytosol 27.46 11.16
TraesCS4A01G060300.1 Wheat cytosol 28.5 11.0
TraesCS4B01G235800.1 Wheat cytosol 28.5 11.0
TraesCS4D01G237200.1 Wheat cytosol 27.46 10.54
Zm00001d028296_P001 Maize mitochondrion 25.91 10.42
KRH75483 Soybean plastid 11.4 7.97
Protein Annotations
MapMan:19.2.2.8.1.4.6Gene3D:3.40.1000.30EntrezGene:843372UniProt:A0A2H1ZEF7ProteinID:AEE35049.2ArrayExpress:AT1G70360
EnsemblPlantsGene:AT1G70360RefSeq:AT1G70360TAIR:AT1G70360RefSeq:AT1G70360-TAIR-GEnsemblPlants:AT1G70360.1TAIR:AT1G70360.1
InterPro:F-box-like_dom_sfInterPro:F-box_domGO:GO:0003674GO:GO:0005488GO:GO:0005515InterPro:IPR001810
RefSeq:NP_177193.2PFAM:PF00646PO:PO:0000013PO:PO:0000037PO:PO:0000084PO:PO:0000230
PO:PO:0000293PO:PO:0001054PO:PO:0001078PO:PO:0001081PO:PO:0001185PO:PO:0004507
PO:PO:0007064PO:PO:0007095PO:PO:0007098PO:PO:0007103PO:PO:0007115PO:PO:0007123
PO:PO:0007611PO:PO:0007616PO:PO:0008019PO:PO:0009005PO:PO:0009006PO:PO:0009009
PO:PO:0009010PO:PO:0009025PO:PO:0009029PO:PO:0009030PO:PO:0009031PO:PO:0009032
PO:PO:0009046PO:PO:0009047PO:PO:0009052PO:PO:0020030PO:PO:0020038PO:PO:0020100
PO:PO:0020137PO:PO:0025022PO:PO:0025281PFscan:PS50181PANTHER:PTHR34791SUPFAM:SSF81383
UniParc:UPI0008495DFE:::::
Description
F-box family protein [Source:TAIR;Acc:AT1G70360]
Coordinates
chr1:+:26508486..26509325
Molecular Weight (calculated)
21541.6 Da
IEP (calculated)
4.779
GRAVY (calculated)
0.318
Length
193 amino acids
Sequence
(BLAST)
001: MNLSGVKRLS EPLLLKNILM EESGDTCELT IVIMTVHAVM LESGFVLFDP DSSMRFSFSK KTLVSLNYTL PSVKGIVGLN FEKEAIVGSF VRVVSIDKRS
101: YVHIVDLLME TLKSDEEEDT LSIDCKVLVW WRMIKDGIVT PLLVDLCYKT GLELPPCFIS LPRELKHKIL ESLPGVDIGT LACVSSELRD MAS
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.