Factsheet for Os03t0232000-01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Os02t0232400-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G23780.1	Os02t0232400-01	AT2G42790.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G235800.1	Wheat	cytosol	60.84	57.8
TraesCS4A01G060300.1	Wheat	cytosol	60.63	57.6
TraesCS4D01G237200.1	Wheat	cytosol	60.63	57.26
EER95223	Sorghum	mitochondrion	55.79	55.79
Zm00001d028296_P001	Maize	mitochondrion	56.0	55.42
CDX99652	Canola	cytosol, extracellular, nucleus	15.37	30.93
GSMUA_Achr8P05000_001	Banana	cytosol, mitochondrion	30.74	28.46
CDX89734	Canola	nucleus	10.53	28.25
CDY15942	Canola	cytosol	21.47	27.72
AT1G70360.1	Thale cress	cytosol, peroxisome, plastid	11.16	27.46
GSMUA_Achr8P04990_001	Banana	mitochondrion	28.0	27.37
Bra030346.1-P	Field mustard	cytosol	20.84	26.98
KRH35641	Soybean	cytosol	25.89	26.51
AT1G23780.1	Thale cress	cytosol	25.47	25.47
CDY25801	Canola	cytosol	25.05	25.43
Bra012387.1-P	Field mustard	cytosol	24.42	25.11
KRG91141	Soybean	cytosol	23.79	24.57
CDY28475	Canola	cytosol	24.21	24.42
PGSC0003DMT400054952	Potato	cytosol	25.05	23.71
VIT_03s0088g00330.t01	Wine grape	cytosol	26.95	22.74
AT1G23770.1	Thale cress	cytosol	16.0	21.71
Solyc01g006990.2.1	Tomato	cytosol, mitochondrion	23.37	20.29
KRH75483	Soybean	plastid	8.84	15.22
Os03t0231950-01	Rice	nucleus	9.05	14.14

Protein Annotations

Gene3D:1.20.1280.50	MapMan:19.2.2.8.1.4.6	Gene3D:3.40.1000.30	ProteinID:BAF11379.1	ProteinID:BAS83113.1	InterPro:F-box-like_dom_sf
InterPro:F-box_dom	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0046983	InterPro:IPR001810
EnsemblPlantsGene:Os03g0232000	EnsemblPlants:Os03t0232000-01	PFAM:PF12937	PFscan:PS50181	PANTHER:PTHR15537	PANTHER:PTHR15537:SF2
UniProt:Q0DTQ9	SMART:SM00256	SUPFAM:SSF54236	SUPFAM:SSF81383	UniParc:UPI0000E11FB9	InterPro:Ubiquitin-like_domsf
SEG:seg	:	:	:	:	:

Description

F-box protein 136Cyclin-like F-box domain containing protein. (Os03t0232000-01)

Coordinates

chr3:-:6987949..6989544

Molecular Weight (calculated)

51016.2 Da

IEP (calculated)

5.620

GRAVY (calculated)

-0.142

Length

475 amino acids

Sequence
(BLAST)

001: MDQRGGAGGA AETHRVQLPD TATLSDVKAF LATKLSAAQP VPAESVRLTL NRSEELLTPD PSATLPALGL ASGDLLYFTL SPLPSPSPPP QPQPQAQPLP
101: RNPNPDVPSI AGAADPTKSP VESGSSSSMP QALCTNPGLP VASDPHHPPP DVVMAEAFAV IKSKSSLVVG DTKREMENVG GADGTVICRL VVALHAALLD
201: AGFLYANPVG SCLQLPQNWA SGSFVPVSMK YTLPELVEAL PVVEEGMVAV LNYSLMGNFM MVYGHVPGAT SGVRRLCLEL PELAPLLYLD SDEVSTAEER
301: EIHELWRVLK DEMCLPLMIS LCQLNNLSLP PCLMALPGDV KAKVLEFVPG VDLARVQCTC KELRDLAADD NLWKKKCEME FNTQGESSQV GRNWKERFGA
401: AWKVSNNKGQ KRPSPFFNYG WGNPYSPHGF PVIGGDSDML PFIGHPNLLG RSFGNQRRNI SPSCSFGGHH RNFLG

Best Arabidopsis Sequence Match ( AT1G23780.1 )
(BLAST)

001: MKLRLRHHET RETLKLELAD ADTLHDLRRR INPTVPSSVH LSLNRKDELI TPSPEDTLRS LGLISGDLIY FSLEAGESSN WKLRDSETVA SQSESNQTSV
101: HDSIGFAEVD VVPDQAKSNP NTSVEDPEGD ISGMEGPEPM DVEQLDMELA AAGSKRLSEP FFLKNILLEK SGDTSELTTL ALSVHAVMLE SGFVLLNHGS
201: DKFNFSKELL TVSLRYTLPE LIKSKDTNTI ESVSVKFQNL GPVVVVYGTV GGSSGRVHMN LDKRRFVPVI DLVMDTSTSD EEGSSSIYRE VFMFWRMVKD
301: RLVIPLLIGI CDKAGLEPPP CLMRLPTELK LKILELLPGV SIGNMACVCT EMRYLASDND LWKQKCLEEV NNFVVTEAGD SVNWKARFAT FWRQKQLAAA
401: SDTFWRQNQL GRRNISTGRS GIRFPRIIGD PPFTWFNGDR MHGSIGIHPG QSARGLGRRT WGQLFTPRCN LGGLN

Arabidopsis Description

SKIP22F-box family protein [Source:UniProtKB/TrEMBL;Acc:C1PI94]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.