CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 1
extracellular 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular, nucleus
Any Predictor:	cytosol, extracellular, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	extracellular

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX68112
CDX73212
CDX79848
CDX79851
CDX80590
CDX85931
CDX87650
CDY13521
CDY15651
CDY39073
CDY50821

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G23780.1	CDX68112	AT1G75950.1	12795696
AT1G23780.1	CDX73212	AT1G75950.1	12795696
AT1G23780.1	CDX80590	AT1G75950.1	12795696
AT1G23780.1	CDX85931	AT1G75950.1	12795696
AT1G23780.1	CDX87650	AT1G75950.1	12795696
AT1G23780.1	CDY13521	AT1G75950.1	12795696
AT1G23780.1	CDY39073	AT1G75950.1	12795696
AT1G23780.1	CDX79848	AT2G42790.1	21798944
AT1G23780.1	CDX79851	AT2G42790.1	21798944
AT1G23780.1	CDY15651	AT2G42790.1	21798944
AT1G23780.1	CDY50821	AT2G42790.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY15942	Canola	cytosol	94.49	60.6
Bra030346.1-P	Field mustard	cytosol	93.22	59.95
CDX89734	Canola	nucleus	40.25	53.67
AT1G23770.1	Thale cress	cytosol	55.93	37.71
CDY28475	Canola	cytosol	58.9	29.51
CDY25801	Canola	cytosol	58.47	29.49
AT1G23780.1	Thale cress	cytosol	54.24	26.95
KRG91141	Soybean	cytosol	34.75	17.83
KRH35641	Soybean	cytosol	34.32	17.46
VIT_03s0088g00330.t01	Wine grape	cytosol	40.25	16.87
GSMUA_Achr8P05000_001	Banana	cytosol, mitochondrion	35.59	16.37
PGSC0003DMT400054952	Potato	cytosol	33.9	15.94
GSMUA_Achr8P04990_001	Banana	mitochondrion	31.78	15.43
Os03t0232000-01	Rice	cytosol	30.93	15.37
EER95223	Sorghum	mitochondrion	30.08	14.95
Solyc01g006990.2.1	Tomato	cytosol, mitochondrion	34.32	14.81
TraesCS4A01G060300.1	Wheat	cytosol	30.08	14.2
TraesCS4B01G235800.1	Wheat	cytosol	30.08	14.2
TraesCS4D01G237200.1	Wheat	cytosol	30.08	14.12
Zm00001d028296_P001	Maize	mitochondrion	28.39	13.96
KRH75483	Soybean	plastid	6.78	5.8

Protein Annotations

EnsemblPlants:CDX99652	EnsemblPlantsGene:GSBRNA2T00108167001	Gene3D:1.20.1280.50	Gene3D:3.40.1000.30	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	PANTHER:PTHR15537	PANTHER:PTHR15537:SF2
PFAM:PF12937	PFscan:PS50181	ProteinID:CDX99652	ProteinID:CDX99652.1	SEG:seg	SMART:SM00256
SUPFAM:SSF81383	UniParc:UPI0004EE3695	MapMan:19.2.2.8.1.4.6	:	:	:

Description

BnaC04g34090D

Coordinates

chrLK031912:-:671615..672325

Molecular Weight (calculated)

26976.2 Da

IEP (calculated)

9.815

GRAVY (calculated)

-0.066

Length

236 amino acids

Sequence
(BLAST)

001: MLESGFMLLN NRGFFDKFTF SKDLLTVSLR YTLPELITKT RVEYVTVTFQ SLSNTVVVYG SLGGRGGMVQ RVSLNKNKFV SVIDLVVDTL KFEKQASCSS
101: YRDVFTFWKM VKDGLSIPLL TCLCEKYGLE LPPCLMQLPT ELKMKILELV PGDSVAKMAC VCAEMRCLAS DDGLWKHKCL EEANHLVVNR SSVSWKAEFA
201: AFWKQRQKVR SDMEISRRSV TSPGIIAQFR RQRRQR

Best Arabidopsis Sequence Match ( AT1G23770.1 )
(BLAST)

001: MDTGFADSNN DSSPGEGSKR GNSGIEGPVP MDVELAAAKS KRLSEPFFLK NVLLEKSGDT SDLTALALSV HAVMLESGFV LLDHGSDKFS FSKKLLSVSL
101: RYTLPELITR KDTNTVESVT VRFQNIGPRL VVYGTLGGSC KRVHMTSLDK SRFLPVIDLV VDTLKFEKQG SSSYYREVFM LWRMVKDELV IPLLIGLCDK
201: AGLESPPCLM LLPTELKLKI LELLPGVSIG YMACVCTEMR YLASDNDLWE HKCLEEGKGC LWKLYTGDVD WKRKFASFWR RKRLDLLARR NPPIKKSNPR
301: FPTLFPDRRD RREPFDRFGP SDFYRFGLRD PRDRFGPRDP RDPHFYGFRY

Arabidopsis Description

Putative F-box protein At1g23770 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZUB9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.