Factsheet for Solyc01g006990.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, mitochondrion

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc07g055840.2.1
Solyc12g011000.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G23780.1	Solyc07g055840.2.1	AT2G42790.1	21798944
AT1G23780.1	Solyc12g011000.1.1	AT2G42790.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400054952	Potato	cytosol	80.62	87.85
KRH35641	Soybean	cytosol	33.64	39.66
AT1G70360.1	Thale cress	cytosol, peroxisome, plastid	13.89	39.38
KRG91141	Soybean	cytosol	31.99	38.04
CDX89734	Canola	nucleus	11.88	36.72
Bra012387.1-P	Field mustard	cytosol	29.98	35.5
CDX99652	Canola	cytosol, extracellular, nucleus	14.81	34.32
VIT_03s0088g00330.t01	Wine grape	cytosol	35.28	34.28
CDY25801	Canola	cytosol	29.07	33.97
CDY28475	Canola	cytosol	29.25	33.97
CDY15942	Canola	cytosol	22.12	32.88
Bra030346.1-P	Field mustard	cytosol	21.75	32.43
AT1G23780.1	Thale cress	cytosol	27.42	31.58
GSMUA_Achr8P05000_001	Banana	cytosol, mitochondrion	29.07	30.99
AT1G23770.1	Thale cress	cytosol	19.2	30.0
GSMUA_Achr8P04990_001	Banana	mitochondrion	25.78	29.01
KRH75483	Soybean	plastid	12.43	24.64
EER95223	Sorghum	mitochondrion	21.21	24.42
Zm00001d028296_P001	Maize	mitochondrion	20.66	23.54
Os03t0232000-01	Rice	cytosol	20.29	23.37
TraesCS4B01G235800.1	Wheat	cytosol	20.66	22.6
TraesCS4D01G237200.1	Wheat	cytosol	20.48	22.27
TraesCS4A01G060300.1	Wheat	cytosol	20.29	22.2

Protein Annotations

Gene3D:1.20.1280.50	MapMan:19.2.2.8.1.4.6	Gene3D:3.40.1000.30	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR001810	UniProt:K4ASR5	InterPro:Npl4_Ub-like_dom	PFAM:PF00646
PFAM:PF11543	PFscan:PS50181	PANTHER:PTHR15537	PANTHER:PTHR15537:SF2	SMART:SM00256	SUPFAM:SSF54236
SUPFAM:SSF81383	EnsemblPlantsGene:Solyc01g006990.2	EnsemblPlants:Solyc01g006990.2.1	UniParc:UPI00027626E7	InterPro:Ubiquitin-like_domsf	SEG:seg

Description

No Description!

Coordinates

chr1:-:1556952..1559079

Molecular Weight (calculated)

62139.3 Da

IEP (calculated)

7.660

GRAVY (calculated)

-0.457

Length

547 amino acids

Sequence
(BLAST)

001: MGRKWKLFCK TKRYDCENQF KTLTSLKQSK SIRKKKEVHR HCHIATMKLR IRCFETKETI KIDVESSSCT LQELKNRISQ AFPSSSIPNS IHLSLNRKDE
101: LQFSEEDMLQ SIGITSGDLI FFTQNPNGFS ISTETHIPKS KNSDTQIVKE SETVKKSDPQ IVKEAETVKK SDTQIDQLEP HETETKTQPG GEEMEEEFME
201: VDDNGDYSDV KFTKSFSVPG FLRKVFTEEL KDDDGGREHK LLVVAVHAVF VESGFVLLDP NTLTEVNVSQ CLNYWCLGYR KTLFYTLPEV IDHVKGDNCN
301: VIHCIELKFQ SLGKFFIAHG SLSGGGKGST FRVTLNEDQL VPFLNVVWAN CGLNEVVDGD FGEKEVFVFW RNVKDGLVLP LLIDLCEKSG FVLPPCFTRL
401: PTELKLKILE SLPGVEIAKV SCLSSELRYL CSSDDLWKKK CGEQFGDGEI SAGGHWKEKF VKSWESRKRR KVINRRRVVD GLRILGGRHP FPIPWTPHVI
501: GGDYDVFPPQ FDNTGNPLGR APPSPLLHPW SNHVRRCHLG GHRSNFP

Best Arabidopsis Sequence Match ( AT1G23780.1 )
(BLAST)

001: MKLRLRHHET RETLKLELAD ADTLHDLRRR INPTVPSSVH LSLNRKDELI TPSPEDTLRS LGLISGDLIY FSLEAGESSN WKLRDSETVA SQSESNQTSV
101: HDSIGFAEVD VVPDQAKSNP NTSVEDPEGD ISGMEGPEPM DVEQLDMELA AAGSKRLSEP FFLKNILLEK SGDTSELTTL ALSVHAVMLE SGFVLLNHGS
201: DKFNFSKELL TVSLRYTLPE LIKSKDTNTI ESVSVKFQNL GPVVVVYGTV GGSSGRVHMN LDKRRFVPVI DLVMDTSTSD EEGSSSIYRE VFMFWRMVKD
301: RLVIPLLIGI CDKAGLEPPP CLMRLPTELK LKILELLPGV SIGNMACVCT EMRYLASDND LWKQKCLEEV NNFVVTEAGD SVNWKARFAT FWRQKQLAAA
401: SDTFWRQNQL GRRNISTGRS GIRFPRIIGD PPFTWFNGDR MHGSIGIHPG QSARGLGRRT WGQLFTPRCN LGGLN

Arabidopsis Description

SKIP22F-box family protein [Source:UniProtKB/TrEMBL;Acc:C1PI94]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.