Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX99652 | Canola | cytosol, extracellular, nucleus | 37.71 | 55.93 |
| AT1G70360.1 | Thale cress | cytosol, peroxisome, plastid | 28.86 | 52.33 |
| CDX89734 | Canola | nucleus | 26.29 | 51.98 |
| Bra030346.1-P | Field mustard | cytosol | 46.0 | 43.87 |
| CDY15942 | Canola | cytosol | 45.71 | 43.48 |
| AT1G23780.1 | Thale cress | cytosol | 54.86 | 40.42 |
| KRG91141 | Soybean | cytosol | 30.29 | 23.04 |
| KRH35641 | Soybean | cytosol | 30.29 | 22.84 |
| VIT_03s0088g00330.t01 | Wine grape | cytosol | 36.57 | 22.74 |
| PGSC0003DMT400054952 | Potato | cytosol | 30.86 | 21.51 |
| GSMUA_Achr8P05000_001 | Banana | cytosol, mitochondrion | 29.43 | 20.08 |
| GSMUA_Achr8P04990_001 | Banana | mitochondrion | 27.14 | 19.55 |
| Solyc01g006990.2.1 | Tomato | cytosol, mitochondrion | 30.0 | 19.2 |
| EER95223 | Sorghum | mitochondrion | 23.71 | 17.47 |
| Zm00001d028296_P001 | Maize | mitochondrion | 23.14 | 16.88 |
| Os03t0232000-01 | Rice | cytosol | 21.71 | 16.0 |
| TraesCS4A01G060300.1 | Wheat | cytosol | 22.29 | 15.6 |
| TraesCS4B01G235800.1 | Wheat | cytosol | 21.43 | 15.0 |
| TraesCS4D01G237200.1 | Wheat | cytosol | 21.43 | 14.91 |
| KRH75483 | Soybean | plastid | 10.0 | 12.68 |
Protein Annotations
| Gene3D:1.20.1280.50 | MapMan:19.2.2.8.1.4.6 | Gene3D:3.40.1000.30 | EntrezGene:838988 | UniProt:A0A178WM62 | ProteinID:AAC98032.1 |
| ProteinID:AEE30430.1 | ArrayExpress:AT1G23770 | EnsemblPlantsGene:AT1G23770 | RefSeq:AT1G23770 | TAIR:AT1G23770 | RefSeq:AT1G23770-TAIR-G |
| EnsemblPlants:AT1G23770.1 | TAIR:AT1G23770.1 | Unigene:At.65926 | InterPro:F-box-like_dom_sf | InterPro:F-box_dom | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0008150 | InterPro:IPR001810 | RefSeq:NP_173789.1 | ProteinID:OAP19367.1 |
| PFAM:PF12937 | PFscan:PS50181 | PANTHER:PTHR15537 | PANTHER:PTHR15537:SF2 | UniProt:Q9ZUB9 | SMART:SM00256 |
| SUPFAM:SSF81383 | UniParc:UPI00000A3C19 | SEG:seg | : | : | : |
Description
Putative F-box protein At1g23770 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZUB9]
Coordinates
chr1:-:8405214..8406266
Molecular Weight (calculated)
39955.4 Da
IEP (calculated)
9.297
GRAVY (calculated)
-0.352
Length
350 amino acids
Sequence
(BLAST)
(BLAST)
001: MDTGFADSNN DSSPGEGSKR GNSGIEGPVP MDVELAAAKS KRLSEPFFLK NVLLEKSGDT SDLTALALSV HAVMLESGFV LLDHGSDKFS FSKKLLSVSL
101: RYTLPELITR KDTNTVESVT VRFQNIGPRL VVYGTLGGSC KRVHMTSLDK SRFLPVIDLV VDTLKFEKQG SSSYYREVFM LWRMVKDELV IPLLIGLCDK
201: AGLESPPCLM LLPTELKLKI LELLPGVSIG YMACVCTEMR YLASDNDLWE HKCLEEGKGC LWKLYTGDVD WKRKFASFWR RKRLDLLARR NPPIKKSNPR
301: FPTLFPDRRD RREPFDRFGP SDFYRFGLRD PRDRFGPRDP RDPHFYGFRY
101: RYTLPELITR KDTNTVESVT VRFQNIGPRL VVYGTLGGSC KRVHMTSLDK SRFLPVIDLV VDTLKFEKQG SSSYYREVFM LWRMVKDELV IPLLIGLCDK
201: AGLESPPCLM LLPTELKLKI LELLPGVSIG YMACVCTEMR YLASDNDLWE HKCLEEGKGC LWKLYTGDVD WKRKFASFWR RKRLDLLARR NPPIKKSNPR
301: FPTLFPDRRD RREPFDRFGP SDFYRFGLRD PRDRFGPRDP RDPHFYGFRY
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.