CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
plasma membrane 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG98876
KRH14452
KRH46090
KRH73702

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G23780.1	KRG98876	AT2G42790.1	21798944
AT1G23780.1	KRH14452	AT2G42790.1	21798944
AT1G23780.1	KRH46090	AT2G42790.1	21798944
AT1G23780.1	KRH73702	AT2G42790.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG91141	Soybean	cytosol	65.22	39.13
KRH35641	Soybean	cytosol	59.78	35.56
PGSC0003DMT400054952	Potato	cytosol	26.81	14.74
CDY25801	Canola	cytosol	24.64	14.53
Bra012387.1-P	Field mustard	cytosol	24.28	14.5
VIT_03s0088g00330.t01	Wine grape	cytosol	29.35	14.39
CDY15942	Canola	cytosol	18.84	14.13
Bra030346.1-P	Field mustard	cytosol	18.48	13.9
CDY28475	Canola	cytosol	23.19	13.59
AT1G23780.1	Thale cress	cytosol	22.1	12.84
GSMUA_Achr8P04990_001	Banana	mitochondrion	22.1	12.55
Solyc01g006990.2.1	Tomato	cytosol, mitochondrion	24.64	12.43
GSMUA_Achr8P05000_001	Banana	cytosol, mitochondrion	21.38	11.5
AT1G70360.1	Thale cress	cytosol, peroxisome, plastid	7.97	11.4
EER95223	Sorghum	mitochondrion	17.39	10.11
AT1G23770.1	Thale cress	cytosol	12.68	10.0
Zm00001d028296_P001	Maize	mitochondrion	16.67	9.58
TraesCS4A01G060300.1	Wheat	cytosol	17.03	9.4
TraesCS4D01G237200.1	Wheat	cytosol	17.03	9.34
TraesCS4B01G235800.1	Wheat	cytosol	16.3	9.0
Os03t0232000-01	Rice	cytosol	15.22	8.84
CDX89734	Canola	nucleus	5.07	7.91
CDX99652	Canola	cytosol, extracellular, nucleus	5.8	6.78

Protein Annotations

EMBL:ACUP02000359	EnsemblPlants:KRH75483	EnsemblPlantsGene:GLYMA_01G087400	PANTHER:PTHR15537	PANTHER:PTHR15537:SF2	ProteinID:KRH75483
ProteinID:KRH75483.1	SEG:seg	UniParc:UPI000296461A	UniProt:K7K2R5	MapMan:19.2.2.8.1.4.6	:

Description

hypothetical protein

Coordinates

chr1:-:26297806..26300352

Molecular Weight (calculated)

30200.9 Da

IEP (calculated)

5.305

GRAVY (calculated)

-0.155

Length

276 amino acids

Sequence
(BLAST)

001: MVAASSSSTA PSPGLCTIPH LSQTPRPRKS SFLKIEVPDS CSLLQLKDTV PRTISSSSSS LHLSLNRKDK IHAPSQEEPL NSLGVAIGNL IFYSLNPTVF
101: TLETLLHKPE TAPRDGPTIQ DSSETLTSDS PFVLDAEKPP TLDAAELESM EMIDGSDETV VVGTNSEPFF MRRVLKEAPG NNVNDFKLLV FMVHGVDSGM
201: AFSGSHLLDD SPPTFSSMIS LRYTLLDILA NGDSHNIYHT KLNCNVNHVF PLLAFRGTRL DIYERKEGSN GIFIWI

Best Arabidopsis Sequence Match ( AT1G23780.1 )
(BLAST)

001: MKLRLRHHET RETLKLELAD ADTLHDLRRR INPTVPSSVH LSLNRKDELI TPSPEDTLRS LGLISGDLIY FSLEAGESSN WKLRDSETVA SQSESNQTSV
101: HDSIGFAEVD VVPDQAKSNP NTSVEDPEGD ISGMEGPEPM DVEQLDMELA AAGSKRLSEP FFLKNILLEK SGDTSELTTL ALSVHAVMLE SGFVLLNHGS
201: DKFNFSKELL TVSLRYTLPE LIKSKDTNTI ESVSVKFQNL GPVVVVYGTV GGSSGRVHMN LDKRRFVPVI DLVMDTSTSD EEGSSSIYRE VFMFWRMVKD
301: RLVIPLLIGI CDKAGLEPPP CLMRLPTELK LKILELLPGV SIGNMACVCT EMRYLASDND LWKQKCLEEV NNFVVTEAGD SVNWKARFAT FWRQKQLAAA
401: SDTFWRQNQL GRRNISTGRS GIRFPRIIGD PPFTWFNGDR MHGSIGIHPG QSARGLGRRT WGQLFTPRCN LGGLN

Arabidopsis Description

SKIP22F-box family protein [Source:UniProtKB/TrEMBL;Acc:C1PI94]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.